Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G085 Amborella trichopoda HOM05D001142 ORTHO05D007350 1.1e-26 122.5 60 100.0
ATR0752G004 Amborella trichopoda HOM05D001142 ORTHO05D007350 2.4e-21 104.8 59 89.8
PSO210G3040 Papaver somniferum HOM05D001142 ORTHO05D007350 4.4e-15 84.0 59 67.8
PSO832G4555 Papaver somniferum HOM05D001142 ORTHO05D007350 4.4e-15 84.0 59 67.8
Eucgr.E03259 Eucalyptus grandis HOM05D001142 ORTHO05D007350 4.9e-14 80.5 53 71.7
MBI02_g32443_MAGBIO Magnolia biondii HOM05D001142 ORTHO05D007350 4.9e-14 80.5 53 67.9
PGSC0003DMG400029730 Solanum tuberosum HOM05D001142 ORTHO05D007350 6.4e-14 80.1 52 71.2
PGR042G2735 Punica granatum HOM05D001142 ORTHO05D007350 1.4e-13 79.0 53 66.0
AUR62014847 Chenopodium quinoa HOM05D001142 ORTHO05D007350 1.9e-13 78.6 52 71.2
AUR62017043 Chenopodium quinoa HOM05D001142 ORTHO05D007350 1.9e-13 78.6 52 71.2
HPP92_017548 Vanilla planifolia HOM05D001142 ORTHO05D007350 1.9e-13 78.6 51 72.5
EL10Ac8g20417 Beta vulgaris HOM05D001142 ORTHO05D007350 2.4e-13 78.2 52 71.2
MD05G1312200 Malus domestica HOM05D001142 ORTHO05D007350 2.4e-13 78.2 53 66.0
Aqoxy4G00719 Aquilegia oxysepala HOM05D001142 ORTHO05D007350 3.2e-13 77.8 54 63.0
TWI38G1874 Tripterygium wilfordii HOM05D001142 ORTHO05D007350 3.2e-13 77.8 53 64.2
FvH4_3g08870 Fragaria vesca HOM05D001142 ORTHO05D007350 4.1e-13 77.4 53 64.2
FAN11G3542 Fragaria x ananassa HOM05D001142 ORTHO05D007350 4.1e-13 77.4 53 64.2
FAN16G1027 Fragaria x ananassa HOM05D001142 ORTHO05D007350 4.1e-13 77.4 53 64.2
Manes.17G047600 Manihot esculenta HOM05D001142 ORTHO05D007350 4.1e-13 77.4 53 64.2
QL05p041636 Quercus lobata HOM05D001142 ORTHO05D007350 4.1e-13 77.4 56 62.5
Sc17g0006090 Simmondsia chinensis HOM05D001142 ORTHO05D007350 7.1e-13 76.6 54 64.8
Actinidia05648 Actinidia chinensis HOM05D001142 ORTHO05D007350 9.2e-13 76.3 54 59.3
Cc02_g13610 Coffea canephora HOM05D001142 ORTHO05D007350 9.2e-13 76.3 53 64.2
Cfa000507 Carpinus fangiana HOM05D001142 ORTHO05D007350 1.2e-12 75.9 53 64.2
CiPaw.09G062000 Carya illinoinensis HOM05D001142 ORTHO05D007350 1.2e-12 75.9 53 64.2
Hund23777 Selenicereus undatus HOM05D001142 ORTHO05D007350 1.2e-12 75.9 52 63.5
Ah.14g089620 Amaranthus hybridus HOM05D001142 ORTHO05D007350 1.6e-12 75.5 52 65.4
MD10G1291700 Malus domestica HOM05D001142 ORTHO05D007350 1.6e-12 75.5 53 62.3
Psat7g115000 Pisum sativum HOM05D001142 ORTHO05D007350 1.6e-12 75.5 51 68.6
Zm00001eb043340 Zea mays HOM05D001142 ORTHO05D007350 1.6e-12 75.5 52 69.2
Cpa.g.sc27.41 Carica papaya HOM05D001142 ORTHO05D007350 2.1e-12 75.1 53 66.0
Lj1C1202G13 Lonicera japonica HOM05D001142 ORTHO05D007350 2.1e-12 75.1 52 63.5
CAN.G313.7 Capsicum annuum HOM05D001142 ORTHO05D007350 2.7e-12 74.7 57 61.4
FAN25G0831 Fragaria x ananassa HOM05D001142 ORTHO05D007350 2.7e-12 74.7 53 62.3
Medtr4g088545 Medicago truncatula HOM05D001142 ORTHO05D007350 2.7e-12 74.7 51 68.6
Solyc10g009090.3 Solanum lycopersicum HOM05D001142 ORTHO05D007350 2.7e-12 74.7 57 61.4
Sopen10g004870 Solanum pennellii HOM05D001142 ORTHO05D007350 2.7e-12 74.7 57 61.4
Prupe.4G050500 Prunus persica HOM05D001142 ORTHO05D007350 3.5e-12 74.3 53 60.4
TAR626G0335 Trochodendron aralioides HOM05D001142 ORTHO05D007350 3.5e-12 74.3 53 64.2
unitig_22.g6223 Utricularia gibba HOM05D001142 ORTHO05D007350 3.5e-12 74.3 51 66.7
Atru.chr10.1826 Acer truncatum HOM05D001142 ORTHO05D007350 4.6e-12 73.9 53 60.4
Atru.chr10.1841 Acer truncatum HOM05D001142 ORTHO05D007350 4.6e-12 73.9 53 60.4
AL4G29590 Arabidopsis lyrata HOM05D001142 ORTHO05D007350 4.6e-12 73.9 51 64.7
AT2G33820 Arabidopsis thaliana HOM05D001142 ORTHO05D007350 4.6e-12 73.9 51 64.7
Carub.0004s1549 Capsella rubella HOM05D001142 ORTHO05D007350 4.6e-12 73.9 51 64.7
Nitab4.5_0003348g0040 Nicotiana tabacum HOM05D001142 ORTHO05D007350 4.6e-12 73.9 56 60.7
Phvul.002G230400 Phaseolus vulgaris HOM05D001142 ORTHO05D007350 4.6e-12 73.9 52 63.5
THA.LOC104820555 Tarenaya hassleriana HOM05D001142 ORTHO05D007350 4.6e-12 73.9 51 64.7
CARHR127920 Cardamine hirsuta HOM05D001142 ORTHO05D007350 6.0e-12 73.6 51 64.7
ClCG03G008100 Citrullus lanatus HOM05D001142 ORTHO05D007350 6.0e-12 73.6 52 63.5
Ciclev10016062m.g Citrus clementina HOM05D001142 ORTHO05D007350 6.0e-12 73.6 53 62.3
SalBow8G2584 Salvia bowleyana HOM05D001142 ORTHO05D007350 6.0e-12 73.6 52 65.4
SalBow8G4316 Salvia bowleyana HOM05D001142 ORTHO05D007350 6.0e-12 73.6 52 65.4
Sed0024625 Sechium edule HOM05D001142 ORTHO05D007350 6.0e-12 73.6 52 65.4
arahy.Tifrunner.gnm1.ann1.FLA5DV Arachis hypogaea HOM05D001142 ORTHO05D007350 7.8e-12 73.2 52 67.3
Lj4g0022253 Lotus japonicus HOM05D001142 ORTHO05D007350 7.8e-12 73.2 53 64.2
Lalb_Chr09g0327741 Lupinus albus HOM05D001142 ORTHO05D007350 7.8e-12 73.2 52 65.4
Nitab4.5_0003942g0080 Nicotiana tabacum HOM05D001142 ORTHO05D007350 7.8e-12 73.2 57 61.4
SGA_v2.0_scaffold22G09685 Striga asiatica HOM05D001142 ORTHO05D007350 7.8e-12 73.2 54 63.0
GSVIVG01021089001 Vitis vinifera HOM05D001142 ORTHO05D007350 7.8e-12 73.2 53 60.4
Actinidia07590 Actinidia chinensis HOM05D001142 ORTHO05D007350 1.0e-11 72.8 53 60.4
Aa31sc652G100 Aethionema arabicum HOM05D001142 ORTHO05D007350 1.0e-11 72.8 51 64.7
Aa31sc652G30 Aethionema arabicum HOM05D001142 ORTHO05D007350 1.0e-11 72.8 51 64.7
Oeu029363.1 Olea europaea HOM05D001142 ORTHO05D007350 1.0e-11 72.8 52 61.5
Hund21213 Selenicereus undatus HOM05D001142 ORTHO05D007350 1.0e-11 72.8 54 61.1
Duzib235G1012 Durio zibethinus HOM05D001142 ORTHO05D007350 1.3e-11 72.4 50 64.0
Sabra11G0038100 Salix brachista HOM05D005633 ORTHO05D007003 1.3e-11 72.4 52 61.5
TPR.G16346 Trifolium pratense HOM05D001142 ORTHO05D007350 1.3e-11 72.4 51 66.7
RcHm_v2.0_Chr5g0008881 Rosa chinensis HOM05D001142 ORTHO05D007350 1.7e-11 72.0 53 60.4
A04p26050 Brassica napus HOM05D001142 ORTHO05D007350 2.3e-11 71.6 50 64.0
BraA04t18107Z Brassica rapa HOM05D001142 ORTHO05D007350 2.3e-11 71.6 50 64.0
COL.COLO4_31439 Corchorus olitorius HOM05D001142 ORTHO05D007350 3.0e-11 71.2 53 58.5
Migut.M01123 Erythranthe guttata HOM05D001142 ORTHO05D007350 3.0e-11 71.2 52 63.5
Glyma.04G143500 Glycine max HOM05D001142 ORTHO05D007350 3.0e-11 71.2 52 61.5
Glyma.07G199200 Glycine max HOM05D001142 ORTHO05D007350 3.0e-11 71.2 51 62.7
Thecc.06G183800 Theobroma cacao HOM05D001142 ORTHO05D007350 3.0e-11 71.2 50 64.0
MELO3C002619.2 Cucumis melo HOM05D001142 ORTHO05D007350 3.9e-11 70.9 52 61.5
Peaxi162Scf01100g00112 Petunia axillaris HOM05D001142 ORTHO05D007350 3.9e-11 70.9 54 59.3
Nn3g19185 Nelumbo nucifera HOM05D001142 ORTHO05D007350 5.1e-11 70.5 53 64.2
MSTRG.15869 Avicennia marina HOM05D001142 ORTHO05D007350 6.6e-11 70.1 51 62.7
C04p63390 Brassica napus HOM05D001142 ORTHO05D007350 6.6e-11 70.1 50 62.0
Glyma.03G038000 Glycine max HOM05D001142 ORTHO05D007350 6.6e-11 70.1 51 62.7
CANSAT11G1440 Cannabis sativa HOM05D001142 ORTHO05D007350 8.6e-11 69.7 51 60.8
DCAR_028059 Daucus carota HOM05D001142 ORTHO05D007350 8.6e-11 69.7 53 58.5
vmacro03910 Vaccinium macrocarpon HOM05D001142 ORTHO05D007350 1.1e-10 69.3 53 56.6
Gohir.A05G159700 Gossypium hirsutum HOM05D001142 ORTHO05D007350 1.5e-10 68.9 50 60.0
Gohir.D05G162400 Gossypium hirsutum HOM05D001142 ORTHO05D007350 1.5e-10 68.9 50 60.0
Gorai.009G167400 Gossypium raimondii HOM05D001142 ORTHO05D007350 1.5e-10 68.9 50 60.0
Potri.011G056000 Populus trichocarpa HOM05D001142 ORTHO05D007350 1.5e-10 68.9 51 58.8
Rhsim13G0179700 Rhododendron simsii HOM05D001142 ORTHO05D007350 1.5e-10 68.9 53 56.6
VMungo0251G1695 Vigna mungo HOM05D001142 ORTHO05D007350 1.5e-10 68.9 48 66.7
arahy.Tifrunner.gnm1.ann1.L69ZU5 Arachis hypogaea HOM05D001142 ORTHO05D007350 1.9e-10 68.6 47 68.1
CsaV3_1G012450 Cucumis sativus L. HOM05D001142 ORTHO05D007350 1.9e-10 68.6 51 60.8
BcaC02g07766 Brassica carinata HOM05D001142 ORTHO05D007350 2.5e-10 68.2 50 60.0
Gorai.010G155300 Gossypium raimondii HOM05D001142 ORTHO05D007350 2.5e-10 68.2 51 62.7
Pp3c1_42820 Physcomitrium patens HOM05D001142 ORTHO05D007350 2.5e-10 68.2 52 59.6
Thhalv10016989m.g Eutrema salsugineum HOM05D001142 ORTHO05D007350 3.3e-10 67.8 50 60.0
Glyma.13G177333 Glycine max HOM05D001142 ORTHO05D007350 3.3e-10 67.8 51 60.8
HanXRQChr01g0004661 Helianthus annuus HOM05D001142 ORTHO05D007350 3.3e-10 67.8 51 60.8
Sp4g16210 Schrenkiella parvula HOM05D001142 ORTHO05D007350 3.3e-10 67.8 50 60.0
Gohir.D06G133450 Gossypium hirsutum HOM05D001142 ORTHO05D007350 4.3e-10 67.4 51 62.7
CDE06G1818 Ceratophyllum demersum HOM05D001142 ORTHO05D007350 7.3e-10 66.6 42 71.4
ECA248G1175 Erigeron canadensis HOM05D001142 ORTHO05D007350 7.3e-10 66.6 52 57.7
Dinv17332 Davidia involucrata HOM05D001142 ORTHO05D007350 1.2e-09 65.9 53 54.7
SHI01675 Sapria himalayana HOM05D001142 ORTHO05D007350 1.6e-09 65.5 53 54.7
Lsat_1_v5_gn_1_128461 Lactuca sativa HOM05D001142 ORTHO05D007350 4.7e-09 63.9 51 58.8
Solyc02g077910.4 Solanum lycopersicum HOM05D001142 ORTHO05D007350 6.2e-09 63.5 47 66.0
Ca_18574_v3 Cicer arietinum L. HOM05D001142 ORTHO05D007350 1.8e-08 62.0 42 66.7
FAN21G1523 Fragaria x ananassa HOM05D001142 ORTHO05D007350 4.0e-08 60.8 42 61.9
SMO269G0016 Selaginella moellendorffii HOM05D001142 ORTHO05D007350 6.8e-08 60.1 55 54.5
Mapoly0001s0527 Marchantia polymorpha HOM05D001142 ORTHO05D007350 8.9e-08 59.7 49 59.2
CBR_g34684 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-06 55.1 58 48.3
Nn1g03646 Nelumbo nucifera HOM05D001142 ORTHO05D007350 2.2e-06 55.1 41 58.5
C03p22050 Brassica napus HOM05D001142 ORTHO05D032860 4.9e-06 53.9 55 45.5
BcaC01g05823 Brassica carinata HOM05D001142 ORTHO05D032860 8.4e-06 53.1 42 52.4
BolC3t14589H Brassica oleracea HOM05D001142 ORTHO05D032860 8.4e-06 53.1 42 52.4


User provided reference genes

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