Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 0.0e+00 1647.9 884 100.0
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 5.7e-212 741.9 903 50.9
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.3e-211 740.7 901 50.4
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.5e-207 726.5 893 51.3
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.1e-205 721.1 888 50.8
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.4e-202 708.8 843 50.5
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.1e-193 680.2 895 49.4
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.2e-188 664.5 930 47.1
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.2e-187 660.2 893 49.0
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.9e-184 649.4 895 46.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 9.6e-183 644.8 894 48.8
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.8e-181 640.6 852 47.4
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.4e-178 629.0 895 47.7
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.7e-176 624.0 898 46.7
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 8.1e-174 615.1 937 45.4
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.1e-173 614.8 895 46.7
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 6.9e-173 612.1 908 44.4
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 6.4e-171 605.5 914 45.5
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.9e-170 604.0 900 44.2
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 5.4e-170 602.4 896 44.4
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.6e-169 600.9 900 45.1
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.6e-169 600.9 864 45.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.7e-169 600.1 899 46.4
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 4.6e-169 599.4 896 45.6
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.3e-168 597.0 815 48.5
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 3.0e-168 596.7 884 47.5
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 8.7e-168 595.1 872 45.3
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.9e-167 594.0 886 45.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.9e-167 594.0 914 45.1
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 9.6e-167 591.7 872 45.6
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.3e-166 591.3 888 44.8
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 2.1e-166 590.5 904 45.7
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 4.8e-166 589.3 878 46.1
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.1e-165 586.6 887 44.5
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 5.8e-164 582.4 904 43.9
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.2e-163 580.5 858 44.8
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 8.4e-163 578.6 896 46.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 8.4e-163 578.6 896 46.2
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.1e-162 578.2 904 44.1
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.4e-162 577.8 912 44.6
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 9.3e-162 575.1 906 42.6
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.6e-161 574.3 893 44.1
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 2.7e-161 573.5 857 46.0
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.3e-160 571.2 887 44.2
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.8e-160 570.9 900 43.2
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.8e-160 570.9 884 45.6
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.5e-159 567.0 895 44.5
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.4e-159 565.5 896 45.5
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 3.7e-158 563.1 888 44.1
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 4.8e-158 562.8 856 42.9
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.2e-158 562.4 898 45.4
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 8.2e-158 562.0 909 44.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.4e-157 561.2 789 48.7
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.4e-157 560.5 901 45.8
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-157 559.7 878 42.8
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.2e-156 558.1 862 46.2
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.4e-154 551.2 912 44.2
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 2.5e-154 550.4 906 43.2
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.0e-152 545.0 905 44.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.1e-151 541.6 874 44.5
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.2e-150 537.3 898 44.8
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.2e-150 537.3 894 43.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 2.2e-150 537.3 902 43.2
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.7e-150 536.6 896 44.1
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 6.9e-149 532.3 778 44.6
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.4e-146 524.6 892 42.8
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 3.2e-146 523.5 819 45.5
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 4.2e-146 523.1 895 43.0
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.1e-145 519.2 807 44.5
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.0e-144 516.9 891 43.1
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.3e-142 511.5 855 44.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.7e-142 511.1 891 42.6
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.3e-142 509.2 895 42.6
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.4e-141 507.3 870 43.7
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.2e-140 505.0 948 38.8
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.9e-138 497.7 886 42.8
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.2e-137 495.0 860 42.7
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.6e-137 494.6 893 40.1
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.7e-137 493.8 943 43.2
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 3.6e-137 493.4 877 43.1
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 1.4e-136 491.5 890 41.7
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.3e-136 490.7 767 44.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.9e-136 490.0 865 42.4
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.1e-135 488.4 883 40.5
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.5e-135 488.0 789 44.0
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 9.7e-135 485.3 871 42.4
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 9.7e-135 485.3 891 39.8
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 4.8e-134 483.0 788 41.6
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.4e-133 481.5 784 42.0
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.5e-132 478.0 879 39.6
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.4e-132 476.9 864 41.7
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.7e-131 474.6 838 41.9
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.9e-130 471.1 875 40.1
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 9.4e-130 468.8 882 38.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.1e-129 467.6 897 40.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 8.0e-129 465.7 819 41.0
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.2e-128 463.0 695 44.2
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 5.7e-127 459.5 820 40.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 6.3e-126 456.1 879 39.8
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 8.2e-126 455.7 869 38.8
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.1e-125 453.4 841 39.4
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 4.1e-125 453.4 881 40.2
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 3.8e-123 446.8 853 38.0
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 5.0e-123 446.4 774 40.4
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 8.5e-123 445.7 825 39.9
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.6e-121 441.4 726 43.1
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.7e-121 440.7 897 37.7
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 3.6e-121 440.3 650 44.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 3.6e-121 440.3 892 39.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.0e-119 434.5 860 40.5
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.7e-118 431.4 829 39.0
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.1e-117 427.2 841 39.0
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 7.0e-117 426.0 776 41.9
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.2e-116 425.2 769 41.9
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 4.5e-116 423.3 774 42.4
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.9e-115 420.6 839 37.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.2e-114 417.2 775 41.3
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.7e-113 414.1 902 38.0
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.0e-112 410.6 747 41.0
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 6.8e-112 409.5 775 39.9
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.3e-110 405.2 777 41.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.3e-107 394.4 734 40.9
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 2.0e-103 381.3 736 38.6
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.6e-100 371.7 707 38.3
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 7.8e-100 369.4 765 38.8
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.2e-94 351.3 771 38.1
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.0e-92 344.7 759 37.7
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 3.0e-91 340.9 758 37.2
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 8.9e-88 329.3 757 36.5
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.5e-87 328.6 976 33.1
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.6e-87 327.8 762 36.4
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 9.8e-87 325.9 769 37.8
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.2e-86 324.7 316 57.0
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.2e-86 324.7 316 57.0
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.4e-85 322.0 759 36.9
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.1e-84 318.2 429 47.1
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.0e-83 315.8 720 35.8
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.7e-78 298.5 873 34.7
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.4e-72 278.1 891 31.9
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 3.1e-56 224.6 688 31.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 4.0e-56 224.2 340 45.6
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.3e-54 219.2 287 51.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.1e-53 213.4 717 28.9
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-52 212.2 372 39.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 6.7e-43 180.3 532 32.9
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 4.5e-39 167.5 769 29.9
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 3.2e-37 161.4 245 44.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 2.7e-36 158.3 153 56.9
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.8e-35 155.6 329 38.6
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 6.3e-33 147.1 234 37.2
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.1e-26 126.3 167 45.5
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 5.7e-26 124.0 156 53.8
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-24 119.8 124 50.8
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.1e-24 119.8 124 50.8
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.4e-23 114.8 127 48.8
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-21 109.0 189 36.5
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-20 106.3 148 41.2
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 1.7e-17 95.9 94 60.6
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 2.8e-17 95.1 77 63.6
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.2e-15 89.7 146 37.0
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 4.5e-15 87.8 119 42.0
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 6.7e-11 73.9 245 29.4
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 4.8e-09 67.8 63 58.7
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 1.1e-08 66.6 100 42.0
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 1.8e-08 65.9 34 88.2
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 2.6e-07 62.0 66 56.1
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 7.7e-07 60.5 90 36.7
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 7.7e-07 60.5 90 36.7
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 7.7e-07 60.5 141 36.9
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.2e-06 58.9 46 67.4
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 3.8e-06 58.2 105 39.0


User provided reference genes

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