Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 4.9e-207 724.2 348 100.0
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 9.1e-121 437.6 354 61.0
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 9.1e-121 437.6 354 61.0
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 6.5e-119 431.4 354 60.5
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 4.4e-115 418.7 353 59.8
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.3e-114 414.5 350 58.9
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.8e-113 413.3 350 58.9
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.7e-112 409.5 352 58.5
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 3.3e-110 402.5 361 57.3
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 2.1e-109 399.8 351 58.1
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 1.0e-108 397.5 348 55.5
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 1.8e-108 396.7 347 56.8
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 2.3e-108 396.4 361 54.8
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.2e-107 394.0 355 54.9
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 1.5e-107 393.7 331 58.9
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 4.4e-107 392.1 355 54.4
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 9.8e-107 391.0 352 56.0
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 1.7e-106 390.2 355 54.4
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 6.4e-106 388.3 346 55.8
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 8.3e-106 387.9 344 56.4
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 8.3e-106 387.9 348 56.9
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 1.8e-105 386.7 344 55.8
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 4.1e-105 385.6 348 55.5
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.4e-105 385.2 334 57.5
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 5.4e-105 385.2 349 55.6
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 5.4e-105 385.2 354 52.5
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 7.0e-105 384.8 348 55.2
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 5.9e-104 381.7 350 55.4
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 7.8e-104 381.3 347 54.5
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 7.8e-104 381.3 357 53.2
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.0e-103 380.9 347 55.3
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 1.0e-103 380.9 346 54.6
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 2.3e-103 379.8 349 55.6
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 2.3e-103 379.8 353 54.7
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 3.0e-103 379.4 347 54.8
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.5e-102 377.1 347 55.0
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 1.5e-102 377.1 345 54.2
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 2.5e-102 376.3 373 52.5
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.5e-102 376.3 347 54.5
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 2.5e-102 376.3 352 52.8
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 3.3e-102 375.9 351 55.0
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 4.3e-102 375.6 358 52.2
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 4.3e-102 375.6 358 52.2
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 7.3e-102 374.8 353 53.5
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 9.5e-102 374.4 345 54.2
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 1.2e-101 374.0 346 53.8
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 1.2e-101 374.0 352 54.3
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 1.6e-101 373.6 348 54.9
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 1.6e-101 373.6 346 54.0
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.1e-101 373.2 358 52.0
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 2.8e-101 372.9 347 54.8
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 3.6e-101 372.5 358 52.0
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 4.7e-101 372.1 358 52.5
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 6.2e-101 371.7 356 51.7
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.0e-100 370.9 350 55.1
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 1.0e-100 370.9 360 52.5
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.4e-100 370.5 359 52.1
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.4e-100 370.5 350 53.4
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 2.3e-100 369.8 351 53.0
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 3.1e-100 369.4 351 52.1
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 8.9e-100 367.9 350 52.9
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 8.9e-100 367.9 346 53.8
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 8.9e-100 367.9 348 53.2
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 8.9e-100 367.9 355 52.4
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 8.9e-100 367.9 355 52.4
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.2e-99 367.5 372 51.3
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 1.2e-99 367.5 347 53.0
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 4.4e-99 365.5 358 50.8
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 7.5e-99 364.8 355 53.2
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 8.3e-98 361.3 337 54.0
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 1.1e-97 360.9 348 52.0
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 1.6e-96 357.1 346 51.2
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 4.6e-96 355.5 366 50.8
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 7.8e-96 354.8 355 51.3
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 1.3e-95 354.0 353 50.7
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 2.3e-95 353.2 354 50.6
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 3.0e-95 352.8 359 51.3
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.9e-95 352.4 350 52.6
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 3.9e-95 352.4 362 50.8
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 3.3e-94 349.4 365 50.4
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 2.8e-93 346.3 361 51.2
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 1.4e-92 344.0 332 52.4
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 1.4e-92 344.0 350 51.4
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 1.8e-92 343.6 332 52.4
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 6.8e-92 341.7 332 51.5
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.2e-91 340.9 337 53.1
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 3.7e-90 335.9 363 49.9
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 8.3e-90 334.7 331 51.1
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.2e-88 330.9 356 48.6
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.7e-87 327.0 361 48.8
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 3.3e-86 322.8 348 47.1
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 4.0e-84 315.8 329 46.8
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 7.8e-80 301.6 346 44.8
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 1.9e-78 297.0 346 47.7
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 7.3e-78 295.0 374 45.2
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 1.1e-76 291.2 248 56.9
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 4.4e-75 285.8 355 46.2
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 6.4e-74 282.0 237 57.4
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 6.2e-69 265.4 279 47.0
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 2.6e-67 260.0 371 39.1
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 7.6e-67 258.5 227 56.8
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 9.0e-60 235.0 225 52.0
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 6.4e-58 228.8 165 63.6
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.6e-51 206.8 208 52.4
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 2.5e-49 200.3 213 47.9
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.2e-48 198.0 208 51.0
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-47 194.5 208 50.5
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.3e-47 194.5 390 31.0
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 1.3e-47 194.5 299 39.1
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.9e-46 190.7 203 49.8
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 3.3e-46 189.9 152 63.8
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 2.4e-44 183.7 203 51.2
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 3.1e-44 183.3 137 59.1
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 1.0e-39 168.3 163 49.7
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 5.1e-39 166.0 241 38.2
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.0e-35 154.1 118 63.6
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.0e-26 125.2 211 37.0
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.6e-19 101.3 58 82.8
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.5e-18 95.5 57 78.9
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 1.6e-16 91.3 155 34.2
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.5e-14 84.7 63 68.3
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 7.0e-12 75.9 53 62.3
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 7.0e-12 75.9 53 62.3
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 7.0e-12 75.9 53 62.3
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 2.7e-11 73.9 52 61.5
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 7.7e-11 72.4 53 62.3
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 7.2e-09 65.9 48 64.6
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 2.1e-08 64.3 126 33.3
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 4.0e-07 60.1 56 55.4
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 4.0e-07 60.1 56 55.4
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 4.0e-07 60.1 56 55.4
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 4.0e-07 60.1 56 55.4


User provided reference genes

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