Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G034 Amborella trichopoda HOM05D000001 ORTHO05D009942 2.3e-146 522.3 288 100.0
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 2.0e-33 147.1 283 38.9
Nn2g12578 Nelumbo nucifera HOM05D000001 ORTHO05D009942 3.5e-33 146.4 276 38.0
Cfa013541 Carpinus fangiana HOM05D000001 ORTHO05D009942 1.0e-32 144.8 279 36.2
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 1.3e-32 144.4 304 37.2
CiPaw.07G187100 Carya illinoinensis HOM05D000001 ORTHO05D009942 6.6e-32 142.1 278 35.3
Manes.08G144300 Manihot esculenta HOM05D000001 ORTHO05D009942 6.6e-32 142.1 294 37.8
Nn8g40269 Nelumbo nucifera HOM05D000001 ORTHO05D009942 8.6e-32 141.7 281 35.9
Aqoxy7G03211 Aquilegia oxysepala HOM05D000001 ORTHO05D009942 2.5e-31 140.2 281 39.1
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 2.5e-31 140.2 290 35.2
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 4.3e-31 139.4 285 35.4
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 4.3e-31 139.4 285 35.8
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 1.0e-29 134.8 285 34.7
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 2.3e-29 133.7 285 35.1
CANSAT01G1218 Cannabis sativa HOM05D000001 ORTHO05D009942 3.0e-29 133.3 308 33.8
QL02p095851 Quercus lobata HOM05D000001 ORTHO05D009942 5.2e-29 132.5 277 36.5
Lj6g0018090 Lotus japonicus HOM05D000001 ORTHO05D009942 9.8e-28 128.3 272 35.3
Ciclev10008915m.g Citrus clementina HOM05D000001 ORTHO05D009942 1.7e-27 127.5 292 34.2
Lj9P729T26 Lonicera japonica HOM05D000001 ORTHO05D009942 8.3e-27 125.2 217 36.9
RcHm_v2.0_Chr5g0006011 Rosa chinensis HOM05D000001 ORTHO05D009942 8.3e-27 125.2 291 32.3
Atru.chr7.517 Acer truncatum HOM05D000001 ORTHO05D009942 1.1e-26 124.8 284 34.9
Medtr4g129330 Medicago truncatula HOM05D000001 ORTHO05D009942 7.0e-26 122.1 269 34.6
FAN21G0240 Fragaria x ananassa HOM05D008511 ORTHO05D010691 1.2e-25 121.3 225 36.0
Aa31LG2G13040 Aethionema arabicum HOM05D000001 ORTHO05D009942 1.0e-24 118.2 301 32.2
Potri.018G097900 Populus trichocarpa HOM05D000001 ORTHO05D009942 1.0e-24 118.2 294 33.3
Cpa.g.sc75.11 Carica papaya HOM05D000001 ORTHO05D009942 1.3e-24 117.9 284 35.6
BcaNung00139 Brassica carinata HOM05D000001 ORTHO05D009942 2.3e-24 117.1 306 34.0
Lj4g0010912 Lotus japonicus HOM05D000001 ORTHO05D009942 1.1e-23 114.8 271 35.4
AT4G16850 Arabidopsis thaliana HOM05D000001 ORTHO05D009942 2.5e-23 113.6 299 33.1
arahy.Tifrunner.gnm1.ann1.HQFS40 Arachis hypogaea HOM05D000001 ORTHO05D009942 3.3e-23 113.2 268 33.2
ClCG11G012210 Citrullus lanatus HOM05D000001 ORTHO05D009942 4.3e-23 112.8 288 30.9
Glyma.13G092300 Glycine max HOM05D000001 ORTHO05D009942 4.3e-23 112.8 271 32.5
Sabra18G0084600 Salix brachista HOM05D000001 ORTHO05D009942 7.3e-23 112.1 255 33.3
BcaC09g50430 Brassica carinata HOM05D000001 ORTHO05D009942 1.2e-22 111.3 306 33.0
A01p20340 Brassica napus HOM05D000001 ORTHO05D009942 1.2e-22 111.3 306 33.0
C01p25510 Brassica napus HOM05D000001 ORTHO05D009942 1.2e-22 111.3 306 33.0
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 1.2e-22 111.3 306 33.0
Medtr1g116000 Medicago truncatula HOM05D000001 ORTHO05D009942 1.2e-22 111.3 277 30.0
Thhalv10025772m.g Eutrema salsugineum HOM05D000001 ORTHO05D009942 1.6e-22 110.9 301 31.6
CsaV3_1G004210 Cucumis sativus L. HOM05D000001 ORTHO05D009942 4.7e-22 109.4 288 30.6
Carub.0007s2447 Capsella rubella HOM05D000001 ORTHO05D009942 6.2e-22 109.0 297 32.7
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 8.0e-22 108.6 281 33.8
Glyma.17G068100 Glycine max HOM05D000001 ORTHO05D009942 1.4e-21 107.8 268 32.1
Psat0s236g0120 Pisum sativum HOM05D000001 ORTHO05D009942 1.8e-21 107.5 226 34.1
Sp7g17230 Schrenkiella parvula HOM05D000001 ORTHO05D009942 2.3e-21 107.1 310 31.6
AL7G37780 Arabidopsis lyrata HOM05D000001 ORTHO05D009942 3.1e-21 106.7 302 32.1
Gohir.A05G006700 Gossypium hirsutum HOM05D000001 ORTHO05D009942 3.1e-21 106.7 288 31.9
Thecc.09G162400 Theobroma cacao HOM05D000001 ORTHO05D009942 4.0e-21 106.3 288 30.2
Psat6g238680 Pisum sativum HOM05D000001 ORTHO05D009942 6.8e-21 105.5 274 31.0
PGR004G0094 Punica granatum HOM05D000001 ORTHO05D009942 6.8e-21 105.5 290 33.4
Lalb_Chr07g0180131 Lupinus albus HOM05D000001 ORTHO05D009942 8.9e-21 105.1 285 31.2
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 2.0e-20 104.0 178 37.1
Gohir.D05G007600 Gossypium hirsutum HOM05D000001 ORTHO05D009942 2.0e-20 104.0 277 32.1
Gorai.009G007700 Gossypium raimondii HOM05D000001 ORTHO05D009942 2.0e-20 104.0 277 32.1
Duzib168G2157 Durio zibethinus HOM05D000001 ORTHO05D009942 7.5e-20 102.1 303 32.0
Nn2g12580 Nelumbo nucifera HOM05D000001 ORTHO05D009942 1.7e-19 100.9 234 35.0
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 2.2e-19 100.5 289 29.1
THA.LOC104811819 Tarenaya hassleriana HOM05D000001 ORTHO05D009942 4.9e-19 99.4 299 29.4
VMungo1215G0291 Vigna mungo HOM05D000001 ORTHO05D009942 8.3e-19 98.6 283 32.2
Glyma.14G069900 Glycine max HOM05D000001 ORTHO05D009942 1.1e-18 98.2 270 30.4
Duzib187G0438 Durio zibethinus HOM05D000001 ORTHO05D009942 1.3e-16 91.3 289 29.4
TAR625G0513 Trochodendron aralioides HOM05D000001 ORTHO05D009942 1.7e-16 90.9 185 40.0
TPR.G10425 Trifolium pratense HOM05D000001 ORTHO05D009942 6.6e-16 89.0 162 38.9
Phvul.001G010200 Phaseolus vulgaris HOM05D000001 ORTHO05D009942 1.5e-15 87.8 273 28.6
AUR62039972 Chenopodium quinoa HOM05D000001 ORTHO05D009942 1.2e-14 84.7 284 31.3
Sc08g0005400 Simmondsia chinensis HOM05D000001 ORTHO05D009942 1.6e-14 84.3 203 32.5
Solyc07g006410.1 Solanum lycopersicum HOM05D000001 ORTHO05D009942 2.8e-14 83.6 252 28.2
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.1e-13 81.6 280 27.9
Ah.14g084030 Amaranthus hybridus HOM05D000001 ORTHO05D009942 8.9e-13 78.6 302 29.1
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.2e-12 78.2 285 29.1
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-12 78.2 288 29.2
VMungo0647G1251 Vigna mungo HOM05D000001 ORTHO05D009942 2.6e-12 77.0 227 30.0
Ca_11326_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 9.8e-12 75.1 148 33.1
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 1.7e-11 74.3 227 30.8
CARHR223490 Cardamine hirsuta HOM05D000001 ORTHO05D009942 2.2e-11 73.9 155 32.9
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 2.9e-11 73.6 285 24.6
SEGI_26894 Sequoiadendron giganteum HOM05D001062 ORTHO05D000884 2.9e-11 73.6 214 26.2
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.9e-11 73.6 284 26.4
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.7e-11 73.2 286 26.6
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.7e-11 73.2 286 26.6
Sed0013089 Sechium edule HOM05D000001 ORTHO05D009942 3.7e-11 73.2 249 29.3
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-10 71.6 224 28.6
ATR0987G009 Amborella trichopoda HOM05D001062 ORTHO05D000884 3.2e-10 70.1 229 27.9
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 5.4e-10 69.3 231 27.3
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 9.2e-10 68.6 276 25.7
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 1.2e-09 68.2 276 25.4
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.1e-09 67.4 279 25.8
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 4.6e-09 66.2 283 27.6
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 7.8e-09 65.5 281 28.1
Manes.16G055300 Manihot esculenta HOM05D001062 ORTHO05D000884 7.8e-09 65.5 222 28.8
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.0e-08 65.1 291 27.1
CAN.G584.60 Capsicum annuum HOM05D000001 ORTHO05D009942 1.0e-08 65.1 249 25.3
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.0e-08 65.1 276 24.6
Ca_11327_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 1.0e-08 65.1 146 31.5
Medtr7g021620 Medicago truncatula HOM05D001062 ORTHO05D000884 1.0e-08 65.1 302 29.8
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.7e-08 64.3 285 25.6
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.7e-08 64.3 281 27.0
Medtr4g096890 Medicago truncatula HOM05D001062 ORTHO05D000884 3.0e-08 63.5 304 28.3
TPR.G27890 Trifolium pratense HOM05D001062 ORTHO05D000884 3.0e-08 63.5 242 29.8
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 3.0e-08 63.5 279 25.4
ECA246G2375 Erigeron canadensis HOM05D001062 ORTHO05D000884 5.1e-08 62.8 227 23.3
Glyma.05G131300 Glycine max HOM05D001062 ORTHO05D000884 5.1e-08 62.8 242 27.3
CANSAT21G1631 Cannabis sativa HOM05D001062 ORTHO05D000884 6.6e-08 62.4 224 26.8
COL.COLO4_07172 Corchorus olitorius HOM05D001062 ORTHO05D000884 6.6e-08 62.4 301 26.9
THA.LOC104814356 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 6.6e-08 62.4 305 27.5
MBI14_g30690_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 8.6e-08 62.0 102 43.1
Ciclev10006798m.g Citrus clementina HOM05D000001 ORTHO05D009942 1.1e-07 61.6 108 38.0
TWI32G0375 Tripterygium wilfordii HOM05D000001 ORTHO05D009942 1.1e-07 61.6 109 36.7
unitig_92.g28189 Utricularia gibba HOM05D001062 ORTHO05D000884 1.1e-07 61.6 240 27.1
MSTRG.16359 Avicennia marina HOM05D001062 ORTHO05D000884 1.9e-07 60.8 236 28.0
Cc09_g05850 Coffea canephora HOM05D001062 ORTHO05D000884 1.9e-07 60.8 244 27.5
Duzib132G1009 Durio zibethinus HOM05D001062 ORTHO05D000884 1.9e-07 60.8 303 28.7
CANSAT64G1264 Cannabis sativa HOM05D001062 ORTHO05D000884 2.5e-07 60.5 208 29.8
THA.LOC104806216 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 2.5e-07 60.5 221 27.6
CANSAT21G2281 Cannabis sativa HOM05D001062 ORTHO05D000884 3.3e-07 60.1 224 26.8
Oeu058936.1 Olea europaea HOM05D001062 ORTHO05D000884 3.3e-07 60.1 301 27.6
BcaNung01744 Brassica carinata HOM05D001062 ORTHO05D000884 4.3e-07 59.7 238 27.7
A07p09480 Brassica napus HOM05D001062 ORTHO05D000884 5.6e-07 59.3 302 26.2
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 5.6e-07 59.3 288 25.3
PGSC0003DMG400017863 Solanum tuberosum HOM05D001062 ORTHO05D000884 5.6e-07 59.3 249 27.3
TAR626G0745 Trochodendron aralioides HOM05D001062 ORTHO05D000884 5.6e-07 59.3 296 26.7
C07p14580 Brassica napus HOM05D001062 ORTHO05D000884 7.3e-07 58.9 302 25.8
BolC7t41957H Brassica oleracea HOM05D001062 ORTHO05D000884 7.3e-07 58.9 302 25.8
Migut.M01989 Erythranthe guttata HOM05D001062 ORTHO05D000884 7.3e-07 58.9 239 26.8
Sopen02g010120 Solanum pennellii HOM05D001062 ORTHO05D000884 7.3e-07 58.9 249 26.9
MELO3C002411.2 Cucumis melo HOM05D001062 ORTHO05D000884 9.5e-07 58.5 302 27.8
Duzib248G0137 Durio zibethinus HOM05D001062 ORTHO05D000884 9.5e-07 58.5 304 27.6
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.5e-07 58.5 283 24.4
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.5e-07 58.5 212 27.4
BraA07t28744Z Brassica rapa HOM05D001062 ORTHO05D000884 1.2e-06 58.2 302 25.8
Sed0024381 Sechium edule HOM05D001062 ORTHO05D000884 1.2e-06 58.2 304 27.6
Solyc02g031830.1 Solanum lycopersicum HOM05D001062 ORTHO05D000884 1.2e-06 58.2 249 26.9
Carub.0007s2120 Capsella rubella HOM05D001062 ORTHO05D000884 1.6e-06 57.8 243 28.4
CsaV3_1G010230 Cucumis sativus L. HOM05D001062 ORTHO05D000884 1.6e-06 57.8 302 27.5
Thhalv10008216m.g Eutrema salsugineum HOM05D001062 ORTHO05D000884 1.6e-06 57.8 214 28.0
HanXRQChr12g0381561 Helianthus annuus HOM05D001062 ORTHO05D000884 1.6e-06 57.8 300 27.7
Lj4g0011148 Lotus japonicus HOM05D001062 ORTHO05D000884 1.6e-06 57.8 299 26.8
Nitab4.5_0000138g0060 Nicotiana tabacum HOM05D001062 ORTHO05D000884 1.6e-06 57.8 240 29.2
SalBow6G3435 Salvia bowleyana HOM05D001062 ORTHO05D000884 1.6e-06 57.8 246 26.0
Atru.chr4.912 Acer truncatum HOM05D001062 ORTHO05D000884 2.1e-06 57.4 224 29.0
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 2.1e-06 57.4 210 28.1
Nitab4.5_0010569g0010 Nicotiana tabacum HOM05D001062 ORTHO05D000884 2.1e-06 57.4 240 29.2
PGR031G2520 Punica granatum HOM05D001062 ORTHO05D000884 2.1e-06 57.4 218 27.5
QL11p013748 Quercus lobata HOM05D001062 ORTHO05D000884 2.1e-06 57.4 284 27.1
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.8e-06 57.0 269 25.7
CARHR226710 Cardamine hirsuta HOM05D001062 ORTHO05D000884 2.8e-06 57.0 252 28.2
Cpa.g.sc42.160 Carica papaya HOM05D001062 ORTHO05D000884 2.8e-06 57.0 222 29.3
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.8e-06 57.0 287 24.0
Ciclev10033399m.g Citrus clementina HOM05D003669 ORTHO05D005046 2.8e-06 57.0 298 24.5
Thecc.02G007900 Theobroma cacao HOM05D001062 ORTHO05D000884 2.8e-06 57.0 304 27.3
BcaB07g32772 Brassica carinata HOM05D001062 ORTHO05D000884 3.6e-06 56.6 302 28.5
Carub.0008s0339 Capsella rubella HOM05D001062 ORTHO05D000884 3.6e-06 56.6 219 29.7
CARHR030610 Cardamine hirsuta HOM05D001062 ORTHO05D000884 3.6e-06 56.6 216 29.2
Gohir.D02G239300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 3.6e-06 56.6 303 27.1
Gorai.005G267600 Gossypium raimondii HOM05D001062 ORTHO05D000884 3.6e-06 56.6 303 27.1
AT4G19950 Arabidopsis thaliana HOM05D001062 ORTHO05D000884 4.7e-06 56.2 299 26.1
BcaC05g27144 Brassica carinata HOM05D001062 ORTHO05D000884 4.7e-06 56.2 302 28.1
C05p30280 Brassica napus HOM05D001062 ORTHO05D000884 4.7e-06 56.2 302 28.1
BolC5t31769H Brassica oleracea HOM05D001062 ORTHO05D000884 4.7e-06 56.2 302 28.1
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 4.7e-06 56.2 287 23.7
COL.COLO4_35750 Corchorus olitorius HOM05D001062 ORTHO05D000884 4.7e-06 56.2 220 27.7
FAN25G0928 Fragaria x ananassa HOM05D001062 ORTHO05D000884 4.7e-06 56.2 247 27.1
Peaxi162Scf01110g00025 Petunia axillaris HOM05D001062 ORTHO05D000884 4.7e-06 56.2 247 25.5
SGA_v2.0_scaffold175G39354 Striga asiatica HOM05D001062 ORTHO05D000884 4.7e-06 56.2 243 26.3
CAN.G79.43 Capsicum annuum HOM05D001062 ORTHO05D000884 6.2e-06 55.8 213 29.1
Cfa002899 Carpinus fangiana HOM05D001062 ORTHO05D000884 6.2e-06 55.8 221 25.3
CiPaw.09G075600 Carya illinoinensis HOM05D001062 ORTHO05D000884 6.2e-06 55.8 303 27.1
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 6.2e-06 55.8 220 26.4
FAN21G1983 Fragaria x ananassa HOM05D001062 ORTHO05D000884 6.2e-06 55.8 247 27.1
Gohir.D06G197200 Gossypium hirsutum HOM05D001062 ORTHO05D000884 6.2e-06 55.8 224 29.0
Phvul.002G191400 Phaseolus vulgaris HOM05D001062 ORTHO05D000884 6.2e-06 55.8 210 29.0
Rhsim03G0075600 Rhododendron simsii HOM05D001062 ORTHO05D000884 6.2e-06 55.8 300 26.0
Sp1g26960 Schrenkiella parvula HOM05D001062 ORTHO05D000884 6.2e-06 55.8 216 29.2
TWI38G2206 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 6.2e-06 55.8 299 26.4
A09p35100 Brassica napus HOM05D001062 ORTHO05D000884 8.1e-06 55.5 302 28.1
CiPaw.03G121200 Carya illinoinensis HOM05D001062 ORTHO05D000884 8.1e-06 55.5 220 27.3
Rhsim11G0075500 Rhododendron simsii HOM05D001062 ORTHO05D000884 8.1e-06 55.5 206 27.2
Sabra05G0142200 Salix brachista HOM05D001062 ORTHO05D000884 8.1e-06 55.5 211 26.5
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 8.1e-06 55.5 289 24.6


User provided reference genes

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