Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0579G174 Amborella trichopoda HOM05D006413 ORTHO05D007722 4.3e-144 514.6 252 100.0
ATR0579G084 Amborella trichopoda HOM05D006413 ORTHO05D007722 8.1e-111 404.1 261 79.3
TAR629G2159 Trochodendron aralioides HOM05D006413 ORTHO05D007722 8.2e-63 244.6 260 50.0
SEGI_13405 Sequoiadendron giganteum HOM05D006413 ORTHO05D007722 7.7e-61 238.0 264 49.6
Nn1g00502 Nelumbo nucifera HOM05D006413 ORTHO05D007722 5.0e-60 235.3 267 49.4
Manes.01G237000 Manihot esculenta HOM05D006413 ORTHO05D007722 2.7e-58 229.6 260 46.2
arahy.Tifrunner.gnm1.ann1.JWHJ24 Arachis hypogaea HOM05D006413 ORTHO05D007722 1.4e-57 227.3 260 47.7
Ca_00994_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 1.4e-57 227.3 260 46.2
Ca_30995_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 1.4e-57 227.3 260 46.2
Dinv34265 Davidia involucrata HOM05D006413 ORTHO05D007722 1.1e-56 224.2 262 48.1
Migut.G00788 Erythranthe guttata HOM05D006413 ORTHO05D007722 1.5e-56 223.8 259 46.3
QL05p084380 Quercus lobata HOM05D006413 ORTHO05D007722 3.3e-56 222.6 260 46.2
Atru.chr5.817 Acer truncatum HOM05D006413 ORTHO05D007722 5.7e-56 221.9 260 45.4
Prupe.3G022900 Prunus persica HOM05D006413 ORTHO05D007722 5.7e-56 221.9 260 46.9
Aqoxy5G04399 Aquilegia oxysepala HOM05D006413 ORTHO05D007722 7.4e-56 221.5 259 46.3
Os06g0104000 Oryza sativa ssp. japonica HOM05D006413 ORTHO05D007722 7.4e-56 221.5 260 44.6
Potri.002G183900 Populus trichocarpa HOM05D006413 ORTHO05D007722 1.7e-55 220.3 260 45.8
Glyma.13G372900 Glycine max HOM05D006413 ORTHO05D007722 3.7e-55 219.2 260 44.6
Rhsim01G0182400 Rhododendron simsii HOM05D006413 ORTHO05D007722 6.3e-55 218.4 307 43.0
Phvul.005G185400 Phaseolus vulgaris HOM05D006413 ORTHO05D007722 1.4e-54 217.2 260 44.6
SGA_v2.0_scaffold12G06253 Striga asiatica HOM05D006413 ORTHO05D007722 1.8e-54 216.9 259 45.6
GSVIVG01027488001 Vitis vinifera HOM05D006413 ORTHO05D007722 1.8e-54 216.9 260 45.4
VMungo1080G0934 Vigna mungo HOM05D006413 ORTHO05D007722 2.4e-54 216.5 260 44.6
TPR.G31784 Trifolium pratense HOM05D006413 ORTHO05D007722 7.0e-54 214.9 260 43.8
COL.COLO4_23085 Corchorus olitorius HOM05D006413 ORTHO05D007722 2.6e-53 213.0 264 44.7
Duzib138G1460 Durio zibethinus HOM05D006413 ORTHO05D007722 4.5e-53 212.2 264 44.3
TWI14G0709 Tripterygium wilfordii HOM05D006413 ORTHO05D007722 4.5e-53 212.2 260 42.3
EL10Ac1g00655 Beta vulgaris HOM05D006413 ORTHO05D007722 7.7e-53 211.5 261 42.9
MELO3C024283.2 Cucumis melo HOM05D006413 ORTHO05D007722 7.7e-53 211.5 260 45.4
MD17G1162400 Malus domestica HOM05D006413 ORTHO05D007722 1.3e-52 210.7 260 44.6
Lj3g0007654 Lotus japonicus HOM05D006413 ORTHO05D007722 3.8e-52 209.1 260 44.2
Lj5g0015604 Lotus japonicus HOM05D006413 ORTHO05D007722 3.8e-52 209.1 260 44.2
Sc26g0002030 Simmondsia chinensis HOM05D006413 ORTHO05D007722 3.8e-52 209.1 264 44.7
MSTRG.12126 Avicennia marina HOM05D006413 ORTHO05D007722 2.5e-51 206.5 260 45.4
Lalb_Chr24g0392741 Lupinus albus HOM05D006413 ORTHO05D007722 3.2e-51 206.1 260 44.2
PSO063G3388 Papaver somniferum HOM05D006413 ORTHO05D007722 4.2e-51 205.7 259 43.2
Psat5g305280 Pisum sativum HOM05D006413 ORTHO05D007722 4.2e-51 205.7 265 43.8
THA.LOC104802107 Tarenaya hassleriana HOM05D006413 ORTHO05D007722 4.2e-51 205.7 260 43.5
AT2G46915 Arabidopsis thaliana HOM05D006413 ORTHO05D007722 5.5e-51 205.3 259 44.4
PSO782G4045 Papaver somniferum HOM05D006413 ORTHO05D007722 5.5e-51 205.3 259 42.9
Medtr2g101420 Medicago truncatula HOM05D006413 ORTHO05D007722 9.4e-51 204.5 262 43.9
Cfa002153 Carpinus fangiana HOM05D006413 ORTHO05D007722 1.2e-50 204.1 260 43.8
Gorai.008G133200 Gossypium raimondii HOM05D006413 ORTHO05D007722 1.6e-50 203.8 264 43.2
Gohir.A12G118600 Gossypium hirsutum HOM05D006413 ORTHO05D007722 2.1e-50 203.4 264 43.2
Gohir.D12G122400 Gossypium hirsutum HOM05D006413 ORTHO05D007722 2.1e-50 203.4 264 43.2
FAN09G4880 Fragaria x ananassa HOM05D006413 ORTHO05D007722 2.7e-50 203.0 260 43.1
Sed0002155 Sechium edule HOM05D006413 ORTHO05D007722 4.7e-50 202.2 260 43.5
Carub.0004s2964 Capsella rubella HOM05D006413 ORTHO05D007722 6.1e-50 201.8 260 44.2
AL4G46380 Arabidopsis lyrata HOM05D006413 ORTHO05D007722 8.0e-50 201.4 260 44.2
Aa31LG1G28280 Aethionema arabicum HOM05D006413 ORTHO05D007722 1.0e-49 201.1 261 44.1
ECA246G2509 Erigeron canadensis HOM05D006413 ORTHO05D007722 1.0e-49 201.1 260 42.7
Cpa.g.sc57.58 Carica papaya HOM05D006413 ORTHO05D007722 1.4e-49 200.7 274 43.4
CARHR142270 Cardamine hirsuta HOM05D006413 ORTHO05D007722 1.8e-49 200.3 262 44.7
FvH4_6g36970 Fragaria vesca HOM05D006413 ORTHO05D007722 1.8e-49 200.3 231 47.6
AUR62014504 Chenopodium quinoa HOM05D006413 ORTHO05D007722 2.3e-49 199.9 261 42.5
Sp4g28940 Schrenkiella parvula HOM05D006413 ORTHO05D007722 2.3e-49 199.9 261 43.7
Sopen03g012060 Solanum pennellii HOM05D006413 ORTHO05D007722 3.0e-49 199.5 260 43.5
Thecc.01G329000 Theobroma cacao HOM05D006413 ORTHO05D007722 4.0e-49 199.1 264 43.6
Cc11_g00050 Coffea canephora HOM05D006413 ORTHO05D007722 5.2e-49 198.7 262 43.1
Thhalv10001331m.g Eutrema salsugineum HOM05D006413 ORTHO05D007722 5.2e-49 198.7 261 44.1
CsaV3_7G033700 Cucumis sativus L. HOM05D006413 ORTHO05D007722 8.8e-49 198.0 260 43.8
Hund26913 Selenicereus undatus HOM05D006413 ORTHO05D007722 1.2e-48 197.6 264 42.8
Zm00001eb268520 Zea mays HOM05D006413 ORTHO05D007722 1.5e-48 197.2 245 45.3
A05p00920 Brassica napus HOM05D006413 ORTHO05D007722 2.6e-48 196.4 261 43.7
BraA05t19093Z Brassica rapa HOM05D006413 ORTHO05D007722 2.6e-48 196.4 261 43.7
HanXRQChr12g0379901 Helianthus annuus HOM05D006413 ORTHO05D007722 2.6e-48 196.4 259 44.8
BcaC02g12635 Brassica carinata HOM05D006413 ORTHO05D007722 3.4e-48 196.1 261 43.3
FAN02G2312 Fragaria x ananassa HOM05D006413 ORTHO05D007722 9.7e-48 194.5 269 41.6
C04p01070 Brassica napus HOM05D006413 ORTHO05D007722 1.3e-47 194.1 261 43.3
Lsat_1_v5_gn_5_42660 Lactuca sativa HOM05D006413 ORTHO05D007722 1.3e-47 194.1 264 42.4
BolC4t21760H Brassica oleracea HOM05D006413 ORTHO05D007722 1.7e-47 193.7 261 43.3
CAN.G317.7 Capsicum annuum HOM05D006413 ORTHO05D007722 1.7e-47 193.7 261 44.1
Nitab4.5_0000911g0040 Nicotiana tabacum HOM05D006413 ORTHO05D007722 1.7e-47 193.7 217 49.3
Eucgr.E00011 Eucalyptus grandis HOM05D006413 ORTHO05D007722 3.7e-47 192.6 259 43.2
RcHm_v2.0_Chr2g0149491 Rosa chinensis HOM05D006413 ORTHO05D007722 6.3e-47 191.8 279 40.1
HPP92_025405 Vanilla planifolia HOM05D006413 ORTHO05D007722 5.3e-46 188.7 256 41.8
DCAR_001546 Daucus carota HOM05D006413 ORTHO05D007722 1.6e-45 187.2 245 43.7
Ah.05g177080 Amaranthus hybridus HOM05D006413 ORTHO05D007722 2.7e-45 186.4 246 41.5
Nitab4.5_0000001g0010 Nicotiana tabacum HOM05D006413 ORTHO05D007722 6.5e-44 181.8 238 45.4
Ciclev10020349m.g Citrus clementina HOM05D006413 ORTHO05D007722 1.8e-41 173.7 134 61.9
Actinidia28080 Actinidia chinensis HOM05D006413 ORTHO05D007722 1.2e-40 171.0 134 61.2
Lj9A544G35 Lonicera japonica HOM05D006413 ORTHO05D007722 3.4e-40 169.5 297 37.7
AUR62038031 Chenopodium quinoa HOM05D006413 ORTHO05D007722 5.7e-40 168.7 245 40.0
Mapoly0083s0051 Marchantia polymorpha HOM05D006413 ORTHO05D007722 2.2e-39 166.8 256 39.1
Pp3c4_17360 Physcomitrium patens HOM05D006413 ORTHO05D007722 1.1e-38 164.5 261 36.8
Psat2g176480 Pisum sativum HOM05D006413 ORTHO05D007722 3.3e-35 152.9 215 40.0
PGR042G2300 Punica granatum HOM05D006413 ORTHO05D007722 5.5e-35 152.1 245 39.2
MBI12_g23070_MAGBIO Magnolia biondii HOM05D006413 ORTHO05D007722 4.0e-33 146.0 314 33.1
ClCG09G001640 Citrullus lanatus HOM05D006413 ORTHO05D007722 6.3e-31 138.7 260 34.6
Sabra02G0131800 Salix brachista HOM05D006413 ORTHO05D007722 1.6e-29 134.0 261 35.6
SMO358G0223 Selaginella moellendorffii HOM05D006413 ORTHO05D007722 1.6e-29 134.0 248 34.3
CANSAT01G2278 Cannabis sativa HOM05D006413 ORTHO05D007722 2.9e-28 129.8 201 37.3
FAN14G2652 Fragaria x ananassa HOM05D006413 ORTHO05D007722 8.6e-28 128.3 212 34.9
vmacro12629 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 1.3e-23 114.4 86 62.8
CDE12G0173 Ceratophyllum demersum HOM05D006413 ORTHO05D007722 4.9e-23 112.5 91 53.8
Oeu059793.1 Olea europaea HOM05D006413 ORTHO05D007722 3.3e-19 99.8 156 38.5
CiPaw.02G050800 Carya illinoinensis HOM05D006413 ORTHO05D007722 4.3e-19 99.4 73 67.1
Hma1.2p1_0074F.1_g038950 Hydrangea macrophylla HOM05D006413 ORTHO05D007722 2.8e-18 96.7 74 60.8
CSS0011223 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 7.5e-16 88.6 164 35.4
CSS0006840 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 1.4e-14 84.3 59 69.5
CSS0032487 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 1.4e-14 84.3 59 69.5
CiPaw.02G050700 Carya illinoinensis HOM05D006413 ORTHO05D007722 1.9e-14 84.0 158 35.4
Glyma.19G019600 Glycine max HOM05D006413 ORTHO05D007722 2.5e-11 73.6 82 43.9
Glyma.15G001000 Glycine max HOM05D006413 ORTHO05D007722 2.0e-08 63.9 47 66.0


User provided reference genes

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