Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 5.4e-198 694.1 347 100.0
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.5e-107 393.7 285 68.1
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 2.8e-106 389.4 269 71.7
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.8e-105 386.7 264 70.5
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 3.1e-105 386.0 338 60.1
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 9.1e-105 384.4 269 71.0
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 3.5e-104 382.5 267 70.4
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 3.5e-104 382.5 267 70.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.1e-102 377.5 339 58.1
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 3.3e-102 375.9 258 71.3
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 3.6e-101 372.5 294 63.6
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 8.0e-101 371.3 269 67.7
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.3e-100 369.8 269 66.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.0e-100 369.4 258 69.8
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 2.0e-99 366.7 331 58.9
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 5.7e-99 365.2 275 67.6
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 9.8e-99 364.4 336 54.8
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 9.8e-99 364.4 269 66.5
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.7e-98 363.6 314 59.2
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.7e-98 363.6 268 67.5
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 2.2e-98 363.2 274 62.0
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 3.7e-98 362.5 293 61.8
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.7e-98 362.5 269 66.2
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 6.3e-98 361.7 307 60.6
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 8.3e-98 361.3 272 64.3
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 8.3e-98 361.3 272 65.4
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 8.3e-98 361.3 265 66.8
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.1e-97 360.9 284 63.0
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.4e-97 360.5 272 65.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.8e-97 360.1 269 65.4
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.8e-97 360.1 283 64.0
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.8e-97 360.1 265 64.5
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.4e-97 359.8 266 66.2
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.2e-97 359.4 269 63.6
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 5.4e-97 358.6 265 64.2
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.4e-97 358.6 267 66.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 7.0e-97 358.2 273 65.2
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 7.0e-97 358.2 264 66.3
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 9.2e-97 357.8 265 66.4
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.2e-96 357.5 264 66.3
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.2e-96 357.5 264 65.9
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.6e-96 357.1 262 66.0
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.6e-96 357.1 262 66.0
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.0e-96 356.7 320 58.1
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 2.7e-96 356.3 295 61.0
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.7e-96 356.3 283 63.3
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 2.7e-96 356.3 340 56.5
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 3.5e-96 355.9 297 59.9
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 4.5e-96 355.5 258 66.3
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 4.5e-96 355.5 333 54.7
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 4.5e-96 355.5 296 62.2
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 7.8e-96 354.8 314 58.0
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.0e-95 354.4 263 66.9
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 2.3e-95 353.2 338 55.6
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 5.0e-95 352.1 272 65.1
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 6.6e-95 351.7 273 61.5
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 8.6e-95 351.3 278 62.6
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 1.5e-94 350.5 279 64.2
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.9e-94 350.1 278 62.9
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.9e-94 350.1 256 68.4
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.5e-94 349.7 269 63.9
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 2.5e-94 349.7 257 65.4
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.5e-94 349.7 342 55.0
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 3.3e-94 349.4 269 63.9
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.3e-94 349.4 255 64.3
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 3.3e-94 349.4 335 56.4
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.3e-94 349.0 277 62.1
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 5.6e-94 348.6 258 65.1
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 7.3e-94 348.2 355 51.8
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 9.5e-94 347.8 272 64.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 9.5e-94 347.8 240 66.7
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 1.2e-93 347.4 265 63.0
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.2e-93 347.4 265 64.2
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 2.8e-93 346.3 277 61.0
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 3.6e-93 345.9 273 61.9
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 3.6e-93 345.9 268 63.8
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.7e-93 345.5 256 63.7
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.7e-93 345.5 255 66.7
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.1e-93 345.1 273 61.9
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.3e-92 343.2 260 63.5
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 2.3e-92 343.2 237 67.9
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 4.0e-92 342.4 257 63.4
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.2e-91 340.9 264 61.4
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 1.2e-91 340.9 264 61.4
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.5e-91 340.5 257 63.4
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 4.4e-91 339.0 264 61.0
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 4.4e-91 339.0 264 61.0
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 5.8e-91 338.6 275 62.9
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.3e-90 337.4 310 56.5
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 2.2e-90 336.7 261 62.1
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.2e-90 336.7 277 59.6
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 1.1e-89 334.3 210 76.2
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.9e-89 333.6 334 53.9
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 2.4e-89 333.2 276 60.1
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.7e-88 329.7 257 61.5
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 7.8e-88 328.2 271 59.0
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.7e-87 327.0 235 64.7
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 2.3e-87 326.6 276 62.7
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 3.9e-87 325.9 239 66.1
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 2.5e-86 323.2 250 61.2
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 8.9e-84 314.7 358 48.3
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.4e-83 312.8 256 61.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 2.4e-81 306.6 214 67.8
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.1e-79 298.9 264 53.4
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 6.6e-79 298.5 298 54.0
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.5e-78 296.6 282 51.4
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 5.6e-78 295.4 190 73.2
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 5.6e-78 295.4 264 53.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.7e-74 283.9 276 50.0
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.1e-73 281.2 232 61.6
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 3.5e-72 276.2 210 62.4
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 7.8e-72 275.0 180 70.6
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.0e-71 274.6 288 56.2
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.1e-65 254.6 232 53.9
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.7e-63 247.3 233 52.4
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 6.6e-55 218.8 215 50.2
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.3e-47 193.7 233 47.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 1.6e-45 187.6 119 74.8
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 9.0e-44 181.8 123 69.9
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.3e-42 177.9 162 54.9
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.4e-41 174.5 140 62.9
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.4e-25 118.6 83 68.7
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.2e-19 101.7 155 38.7
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.7e-18 97.8 61 73.8
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.7e-18 97.8 61 73.8
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 5.0e-18 96.3 68 69.1
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 6.1e-16 89.4 68 60.3
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.9e-15 86.7 219 31.1
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 6.7e-15 85.9 163 37.4
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.5e-14 84.7 212 30.7
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.6e-14 84.0 215 30.7
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.6e-14 84.0 215 30.2
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 5.7e-14 82.8 198 31.3
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 5.7e-14 82.8 198 31.3
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 5.7e-14 82.8 220 30.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 7.4e-14 82.4 215 29.8
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 7.4e-14 82.4 194 32.0
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.7e-14 82.0 176 31.8
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 9.7e-14 82.0 218 29.4
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.3e-13 81.6 201 32.3
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.7e-13 81.3 260 31.2
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 2.2e-13 80.9 187 29.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.8e-13 80.5 222 29.3
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.8e-13 80.5 78 55.1
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 6.3e-13 79.3 194 29.4
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 8.2e-13 79.0 173 31.8
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 1.1e-12 78.6 215 30.7
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.1e-12 78.6 197 29.9
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 1.4e-12 78.2 169 32.0
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.4e-12 78.2 301 25.2
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.8e-12 77.8 219 28.3
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.8e-12 77.8 157 33.8
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.1e-12 77.0 64 53.1
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 4.1e-12 76.6 156 33.3
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.1e-12 76.6 213 29.1
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 4.1e-12 76.6 198 28.8
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 9.1e-12 75.5 157 31.8
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 9.1e-12 75.5 192 28.1
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 9.1e-12 75.5 195 29.7
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.5e-11 74.7 222 30.6
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 1.5e-11 74.7 149 33.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.0e-11 74.3 131 35.1
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 2.6e-11 73.9 178 31.5
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 5.9e-11 72.8 212 27.4
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 5.9e-11 72.8 194 30.4
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 5.9e-11 72.8 213 27.2
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.3e-10 71.6 143 32.2
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.7e-10 71.2 205 29.3
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.2e-10 70.9 202 29.2
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 3.8e-10 70.1 213 27.7
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 6.5e-10 69.3 195 29.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 4.2e-09 66.6 237 26.6
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 9.4e-09 65.5 137 29.2
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 8.0e-08 62.4 184 30.4
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.0e-07 62.0 156 29.5
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.0e-07 62.0 265 24.9
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 2.3e-07 60.8 90 36.7
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.1e-06 58.5 138 29.7
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 1.1e-06 58.5 107 32.7
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 4.4e-06 56.6 103 34.0


User provided reference genes

Program Settings