Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 4.7e-121 438.0 235 100.0
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.8e-73 279.3 236 66.1
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.1e-72 277.3 236 65.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.2e-71 273.9 237 67.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.9e-70 269.2 237 66.2
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 3.8e-70 268.9 205 75.6
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.5e-70 268.1 191 75.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 6.5e-70 268.1 203 76.4
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 8.4e-70 267.7 186 75.8
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 8.4e-70 267.7 238 67.2
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 2.5e-69 266.2 197 76.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.2e-69 265.8 191 74.9
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 3.2e-69 265.8 198 74.7
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.2e-69 265.4 188 73.9
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 4.2e-69 265.4 204 70.6
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 5.5e-69 265.0 187 79.1
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 7.2e-69 264.6 187 78.1
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 9.3e-69 264.2 183 82.0
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 3.5e-68 262.3 203 74.9
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.5e-68 262.3 181 81.8
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.5e-68 262.3 180 80.6
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.6e-68 261.9 238 64.7
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.1e-68 261.5 207 70.0
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 6.1e-68 261.5 244 61.9
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 6.1e-68 261.5 188 77.7
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.0e-67 260.8 236 64.8
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.3e-67 260.4 203 74.9
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.3e-67 260.4 221 68.3
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.3e-67 260.4 221 68.3
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 3.0e-67 259.2 229 63.8
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 5.1e-67 258.5 206 70.4
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 6.7e-67 258.1 202 74.3
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 8.7e-67 257.7 238 63.9
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.1e-66 257.3 223 70.0
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.5e-66 256.9 203 73.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.9e-66 256.5 189 75.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.9e-66 256.5 187 76.5
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.9e-66 256.5 243 62.6
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.3e-66 255.4 191 75.4
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 4.3e-66 255.4 218 65.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 7.4e-66 254.6 237 63.3
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.3e-65 253.8 238 61.3
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.2e-65 253.1 269 59.5
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.8e-65 252.7 190 72.1
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 8.2e-65 251.1 177 79.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 8.2e-65 251.1 177 77.4
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.1e-64 250.8 226 66.4
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.8e-64 250.0 199 69.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 3.1e-64 249.2 178 74.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.1e-64 249.2 178 77.0
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 4.1e-64 248.8 181 76.2
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 5.3e-64 248.4 207 64.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.2e-63 247.3 187 73.8
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.0e-63 246.5 181 75.7
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 2.6e-63 246.1 178 76.4
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.6e-63 246.1 177 78.0
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 3.4e-63 245.7 205 69.3
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 4.5e-63 245.4 178 75.8
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 7.7e-63 244.6 227 62.1
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.3e-62 243.8 203 71.4
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.3e-62 243.8 176 73.3
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.3e-62 243.8 216 67.1
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.3e-62 243.8 198 71.7
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 5.0e-62 241.9 184 75.0
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 5.0e-62 241.9 192 70.8
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 6.5e-62 241.5 246 61.4
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.1e-61 240.7 183 70.5
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.1e-61 240.7 183 73.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.4e-61 240.4 221 63.3
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.4e-61 240.4 183 70.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.9e-61 240.0 168 80.4
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.5e-61 239.6 240 60.8
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.5e-61 239.6 240 60.8
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 5.5e-61 238.4 225 65.3
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 7.2e-61 238.0 184 73.9
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.1e-60 236.5 187 69.5
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.7e-60 236.1 183 73.8
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 3.6e-60 235.7 182 75.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 6.1e-60 235.0 240 60.8
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.0e-59 234.2 212 60.8
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.8e-59 233.4 242 60.3
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.8e-59 233.4 183 73.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 5.1e-59 231.9 186 66.7
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.8e-59 231.1 221 62.0
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 8.8e-59 231.1 186 73.1
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.1e-58 230.7 174 73.6
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.5e-58 230.3 222 61.3
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 4.3e-58 228.8 178 73.0
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.3e-57 227.3 213 64.3
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.3e-57 227.3 213 64.3
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 8.2e-57 224.6 194 63.9
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.1e-56 224.2 195 61.5
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.4e-56 223.8 253 56.9
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.8e-56 223.4 184 70.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.8e-56 223.4 255 51.8
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 3.1e-56 222.6 185 70.3
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.7e-55 218.0 223 55.6
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.6e-52 210.3 181 64.6
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.6e-52 210.3 183 67.2
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.1e-52 209.9 148 78.4
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.0e-51 207.6 198 60.6
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.4e-51 207.2 270 48.5
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 8.8e-51 204.5 213 57.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 9.7e-50 201.1 135 74.8
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 5.3e-48 195.3 175 59.4
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 9.1e-48 194.5 150 68.7
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 3.6e-44 182.6 226 49.6
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.1e-44 181.8 236 51.3
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.0e-43 179.5 125 82.4
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 5.7e-42 175.3 145 62.8
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.7e-38 163.7 215 49.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 6.5e-38 161.8 177 53.1
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.1e-36 156.8 255 46.7
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-31 140.2 104 68.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.9e-31 138.7 104 68.3
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.2e-29 132.9 100 67.0
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.5e-29 131.3 91 71.4
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.5e-26 121.7 98 66.3
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 7.5e-26 121.7 123 50.4
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 2.8e-25 119.8 97 76.3
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.4e-24 117.5 120 53.3
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.4e-24 116.7 140 50.0
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.2e-24 114.8 73 76.7
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.0e-23 113.6 170 42.9
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.0e-23 113.6 227 37.0
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 4.5e-23 112.5 137 50.4
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.0e-22 111.3 153 45.8
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 5.0e-22 109.0 210 38.1
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 8.6e-22 108.2 210 37.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.1e-21 107.8 221 36.2
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 9.5e-21 104.8 217 37.3
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 7.5e-18 95.1 198 34.8
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.5e-18 95.1 107 54.2
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 9.2e-16 88.2 94 45.7
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 3.1e-11 73.2 122 41.0
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.4e-10 69.7 173 32.4
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 2.2e-09 67.0 51 68.6
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.7e-07 60.1 149 32.9
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 7.8e-07 58.5 53 77.4


User provided reference genes

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