Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 2.6e-135 485.3 239 100.0
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 1.8e-88 329.7 212 73.6
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 2.9e-86 322.4 212 73.1
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 6.5e-86 321.2 212 73.6
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 2.8e-84 315.8 212 72.2
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 4.7e-84 315.1 212 72.2
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 4.7e-84 315.1 211 70.1
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.4e-83 313.5 211 70.6
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.0e-83 312.4 212 71.2
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 3.0e-83 312.4 209 71.8
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 6.8e-83 311.2 212 71.7
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 7.5e-82 307.8 205 71.2
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 9.8e-82 307.4 205 70.7
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.3e-81 307.0 212 70.3
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.3e-81 307.0 188 76.1
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.7e-81 306.6 209 69.9
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.7e-81 306.6 212 71.2
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 1.4e-80 303.5 211 67.8
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 2.7e-79 299.3 227 64.3
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 1.3e-78 297.0 212 68.9
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 1.3e-78 297.0 209 68.4
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 5.0e-78 295.0 209 67.5
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 6.6e-78 294.7 212 70.3
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.1e-77 293.9 212 67.5
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.5e-77 293.5 209 66.5
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 4.3e-77 292.0 205 67.3
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 5.6e-77 291.6 206 68.4
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 9.5e-77 290.8 205 68.8
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 2.1e-76 289.7 212 67.5
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.1e-76 289.7 196 70.9
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 2.8e-76 289.3 245 61.2
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 3.0e-75 285.8 209 67.5
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 4.0e-75 285.4 213 64.3
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 8.9e-75 284.3 209 67.0
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.5e-74 283.5 212 67.0
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.5e-74 283.5 212 67.0
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.5e-74 283.5 212 67.0
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 2.0e-74 283.1 211 66.8
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 3.4e-74 282.3 208 64.4
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 4.4e-74 282.0 213 65.3
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 5.8e-74 281.6 209 65.1
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 5.8e-74 281.6 207 66.2
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 7.5e-74 281.2 209 63.6
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 7.5e-74 281.2 213 64.8
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.3e-73 280.4 204 68.6
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-73 280.4 213 64.8
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-73 280.4 213 64.8
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-73 280.4 213 64.8
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 2.2e-73 279.6 213 64.8
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 2.2e-73 279.6 209 66.5
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 2.9e-73 279.3 213 64.8
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 3.7e-73 278.9 224 62.5
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 3.7e-73 278.9 215 66.0
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 3.7e-73 278.9 205 63.9
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 8.3e-73 277.7 210 64.3
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 8.3e-73 277.7 207 63.8
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.1e-72 277.3 209 64.1
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.4e-72 276.9 209 65.6
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.8e-72 276.6 209 65.1
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.4e-72 276.2 212 66.0
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 4.1e-72 275.4 210 63.3
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 5.4e-72 275.0 213 62.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 7.0e-72 274.6 209 65.1
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 9.2e-72 274.2 212 64.2
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 9.2e-72 274.2 186 68.8
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 9.2e-72 274.2 213 62.0
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-71 273.9 207 64.3
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-71 273.9 207 64.3
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.6e-71 273.5 212 64.2
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 2.0e-71 273.1 205 65.9
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 2.7e-71 272.7 219 61.6
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 3.5e-71 272.3 205 65.9
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 3.5e-71 272.3 212 62.7
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 4.6e-71 271.9 212 63.2
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.6e-71 271.9 209 63.2
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 6.0e-71 271.6 212 62.7
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 7.8e-71 271.2 212 62.7
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 7.8e-71 271.2 212 65.6
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.0e-70 270.8 213 62.9
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.7e-70 270.0 205 64.9
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.7e-70 270.0 213 62.0
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.0e-70 269.2 214 61.7
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 3.9e-70 268.9 205 63.9
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 1.1e-69 267.3 210 62.9
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.1e-69 267.3 212 62.7
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.1e-69 267.3 213 62.9
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 2.5e-69 266.2 212 60.8
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 2.5e-69 266.2 213 62.4
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 3.6e-68 262.3 215 60.9
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 1.1e-67 260.8 193 63.2
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 1.8e-67 260.0 210 59.0
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 3.1e-67 259.2 208 58.7
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 6.8e-67 258.1 213 62.4
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 6.8e-67 258.1 213 62.4
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 6.8e-67 258.1 213 62.4
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.2e-66 257.3 212 62.3
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.7e-65 253.4 213 61.0
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 5.4e-64 248.4 200 60.0
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 7.0e-64 248.1 183 65.0
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.2e-63 247.3 192 63.0
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 4.6e-63 245.4 192 65.1
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 4.6e-63 245.4 186 62.9
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 8.6e-62 241.1 237 53.6
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 4.0e-59 232.3 155 69.0
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 4.0e-59 232.3 197 59.4
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 4.0e-59 232.3 154 71.4
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 5.8e-58 228.4 185 58.9
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 5.8e-58 228.4 200 58.0
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 1.7e-54 216.9 205 52.2
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.5e-50 203.8 140 67.1
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 3.8e-49 199.1 206 49.5
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.6e-47 193.7 212 53.3
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.4e-40 170.6 112 68.8
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.5e-37 160.6 135 60.0
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 5.4e-32 142.1 184 37.5
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.3e-30 137.5 79 75.9
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 1.6e-28 130.6 180 40.6
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 2.0e-26 123.6 174 42.0
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 4.5e-26 122.5 109 49.5
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 3.5e-23 112.8 63 76.2
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 1.6e-20 104.0 105 50.5
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 2.9e-17 93.2 88 58.0
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 3.2e-16 89.7 196 32.7
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 4.6e-15 85.9 79 55.7
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 5.1e-14 82.4 50 68.0
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 4.1e-11 72.8 91 45.1
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 9.0e-11 71.6 83 49.4
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 4.5e-10 69.3 78 48.7
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 2.9e-09 66.6 86 45.3
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 1.9e-08 63.9 45 62.2
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.7e-07 60.1 40 67.5
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.7e-07 60.1 150 32.7


User provided reference genes

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