Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.4e-198 696.0 338 100.0
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.8e-121 439.9 338 62.4
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.0e-108 396.0 338 57.7
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 4.6e-101 372.1 338 55.9
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 2.3e-100 369.8 347 55.6
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 3.0e-100 369.4 344 54.9
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 8.6e-100 367.9 342 55.8
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.9e-99 366.7 302 57.0
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 4.3e-99 365.5 300 59.3
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 5.6e-99 365.2 347 55.3
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.2e-98 364.0 352 54.5
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 2.1e-98 363.2 352 54.5
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 3.6e-98 362.5 358 53.6
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 3.6e-98 362.5 343 54.5
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 4.7e-98 362.1 301 58.8
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 1.1e-97 360.9 358 53.4
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 2.3e-97 359.8 299 59.9
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 3.1e-97 359.4 350 54.3
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 3.1e-97 359.4 297 59.9
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 3.1e-97 359.4 348 52.9
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.0e-97 359.0 345 53.3
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 4.0e-97 359.0 346 55.5
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 4.0e-97 359.0 341 54.0
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 6.8e-97 358.2 346 55.5
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 8.9e-97 357.8 299 58.2
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 8.9e-97 357.8 302 57.3
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 8.9e-97 357.8 305 57.4
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 1.2e-96 357.5 301 59.8
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 1.5e-96 357.1 345 54.2
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 2.0e-96 356.7 346 55.2
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 2.6e-96 356.3 361 53.7
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.4e-96 355.5 274 58.8
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.4e-96 355.5 345 53.0
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 4.4e-96 355.5 297 59.9
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 5.8e-96 355.1 344 52.6
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 5.8e-96 355.1 342 52.6
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 5.8e-96 355.1 297 59.6
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 5.8e-96 355.1 301 59.5
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 7.6e-96 354.8 357 52.4
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 9.9e-96 354.4 300 59.3
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 9.9e-96 354.4 298 58.7
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 9.9e-96 354.4 300 59.3
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 9.9e-96 354.4 356 52.5
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 9.9e-96 354.4 356 52.5
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 9.9e-96 354.4 355 50.4
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 9.9e-96 354.4 357 52.7
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 1.3e-95 354.0 356 53.4
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.3e-95 354.0 361 53.2
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.3e-95 354.0 345 52.2
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.7e-95 353.6 346 52.0
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 2.9e-95 352.8 298 58.4
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 2.9e-95 352.8 281 61.2
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.9e-95 352.8 347 53.0
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 3.8e-95 352.4 298 58.4
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 3.8e-95 352.4 298 58.4
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 3.8e-95 352.4 357 52.1
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 4.9e-95 352.1 355 52.7
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 6.4e-95 351.7 300 59.0
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 6.4e-95 351.7 345 52.8
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 8.4e-95 351.3 340 52.4
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 8.4e-95 351.3 353 51.8
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.1e-94 350.9 274 57.7
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 1.4e-94 350.5 324 54.9
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 1.4e-94 350.5 301 59.1
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 1.4e-94 350.5 342 52.3
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 1.9e-94 350.1 306 57.8
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.9e-94 350.1 349 52.7
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 2.4e-94 349.7 300 58.7
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 2.4e-94 349.7 354 53.4
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 2.4e-94 349.7 349 52.1
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 3.2e-94 349.4 365 52.3
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 3.2e-94 349.4 363 51.8
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 5.4e-94 348.6 304 55.6
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 5.4e-94 348.6 352 51.7
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 5.4e-94 348.6 363 52.1
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 5.4e-94 348.6 296 58.8
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 7.1e-94 348.2 296 57.1
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.2e-93 347.4 307 56.0
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 1.6e-93 347.1 363 51.0
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.6e-93 347.1 348 53.7
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.6e-93 347.1 351 53.0
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 2.1e-93 346.7 306 56.9
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 2.1e-93 346.7 370 51.4
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 2.1e-93 346.7 364 52.7
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 2.7e-93 346.3 354 53.1
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 2.7e-93 346.3 348 53.2
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.5e-93 345.9 299 56.9
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 6.0e-93 345.1 356 52.2
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 6.0e-93 345.1 351 53.0
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 6.0e-93 345.1 333 53.5
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 6.0e-93 345.1 358 49.4
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 7.8e-93 344.7 306 55.9
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 1.3e-92 344.0 300 57.3
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 2.3e-92 343.2 306 56.5
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 3.0e-92 342.8 346 51.7
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 3.0e-92 342.8 306 55.2
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 6.6e-92 341.7 303 56.1
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 1.5e-91 340.5 322 54.7
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 1.5e-91 340.5 322 54.7
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.5e-91 340.5 349 52.1
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 2.5e-91 339.7 307 56.0
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 2.5e-91 339.7 307 56.0
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 2.5e-91 339.7 331 52.3
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.6e-91 338.6 295 55.6
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 4.7e-90 335.5 282 55.0
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 8.1e-90 334.7 294 52.7
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 5.8e-88 328.6 312 49.4
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 7.1e-86 321.6 299 54.5
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.7e-84 317.0 344 50.6
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 1.5e-83 313.9 325 51.4
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.9e-83 313.5 284 55.6
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 1.9e-83 313.5 431 43.6
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 3.3e-83 312.8 323 50.5
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.6e-82 310.5 311 52.7
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 4.8e-82 308.9 271 55.4
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.8e-81 307.0 313 52.4
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.3e-76 290.8 229 61.1
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 6.2e-74 282.0 344 46.8
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 6.9e-73 278.5 197 66.5
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.0e-72 276.9 197 65.5
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 1.7e-71 273.9 197 64.0
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.8e-68 263.8 263 54.8
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 3.0e-68 263.1 276 51.4
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 3.3e-67 259.6 279 50.2
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 6.9e-65 251.9 230 54.3
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.4e-54 217.6 156 63.5
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.6e-43 180.3 129 65.1
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 2.1e-37 160.6 204 42.6
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 7.4e-35 152.1 89 75.3
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 9.7e-35 151.8 103 70.9
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.7e-29 133.7 142 48.6
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 5.2e-28 129.4 171 45.0
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 3.1e-25 120.2 101 61.4
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 1.9e-22 110.9 88 54.5
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 6.3e-18 95.9 76 59.2
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 3.1e-17 93.6 76 57.9
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.7e-15 87.8 147 39.5
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.1e-14 85.1 132 42.4
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.2e-11 75.1 81 48.1
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 1.2e-08 65.1 173 28.9
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.6e-08 64.7 79 43.0
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 1.6e-08 64.7 42 64.3


User provided reference genes

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