Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 3.8e-82 308.1 159 100.0
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 3.9e-18 95.5 161 42.2
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 3.3e-17 92.4 164 41.5
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.8e-16 89.4 155 37.4
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 4.8e-16 88.6 126 42.9
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 4.8e-16 88.6 167 37.7
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 6.2e-16 88.2 152 38.8
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.1e-15 87.4 157 37.6
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.4e-15 87.0 163 38.7
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.4e-15 87.0 126 41.3
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 4.0e-15 85.5 125 41.6
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 4.0e-15 85.5 161 36.0
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.3e-15 85.1 136 39.7
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 5.3e-15 85.1 145 37.9
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 6.9e-15 84.7 138 38.4
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 9.0e-15 84.3 154 38.3
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 9.0e-15 84.3 136 39.0
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.5e-14 83.6 163 38.0
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.0e-14 83.2 160 38.8
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.6e-14 82.8 166 36.1
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.6e-14 82.8 159 38.4
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.6e-14 82.8 161 35.4
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.6e-14 82.8 124 42.7
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 3.4e-14 82.4 157 37.6
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 4.4e-14 82.0 142 40.8
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 4.4e-14 82.0 138 38.4
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 4.4e-14 82.0 157 36.3
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 5.8e-14 81.6 160 36.2
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 5.8e-14 81.6 156 39.1
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 5.8e-14 81.6 164 36.6
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 7.6e-14 81.3 153 37.3
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 7.6e-14 81.3 159 36.5
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 7.6e-14 81.3 154 40.3
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 7.6e-14 81.3 124 39.5
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 9.9e-14 80.9 160 38.1
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 9.9e-14 80.9 160 38.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 1.3e-13 80.5 157 36.3
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.3e-13 80.5 112 43.8
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.3e-13 80.5 173 32.9
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.8e-13 79.0 162 36.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.9e-13 78.6 163 36.2
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 4.9e-13 78.6 114 43.0
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 8.4e-13 77.8 146 37.0
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 2.4e-12 76.3 162 35.2
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.4e-12 76.3 153 34.6
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.4e-12 76.3 138 41.3
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.2e-12 75.9 137 38.7
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.2e-12 75.9 137 38.7
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.2e-12 75.9 153 34.6
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 4.2e-12 75.5 138 37.0
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 4.2e-12 75.5 153 36.6
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 5.4e-12 75.1 162 37.7
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 5.4e-12 75.1 175 35.4
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 9.3e-12 74.3 114 43.0
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.2e-11 73.9 154 33.1
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.2e-11 73.9 122 36.9
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.2e-11 73.9 122 36.9
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 1.2e-11 73.9 139 34.5
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.2e-11 73.9 152 36.8
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.6e-11 73.6 137 38.0
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.6e-11 73.6 156 34.6
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.6e-11 73.6 158 35.4
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.1e-11 73.2 145 36.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 2.7e-11 72.8 149 36.9
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.5e-11 72.4 178 36.0
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.6e-11 72.0 138 37.0
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 4.6e-11 72.0 140 41.4
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 6.0e-11 71.6 138 36.2
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 7.9e-11 71.2 150 35.3
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 7.9e-11 71.2 151 34.4
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.0e-10 70.9 143 35.0
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 1.3e-10 70.5 143 35.0
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.3e-10 70.5 144 34.7
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 1.7e-10 70.1 144 34.7
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.7e-10 70.1 119 36.1
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.3e-10 69.7 158 31.0
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.0e-10 69.3 113 42.5
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 6.6e-10 68.2 161 36.0
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 6.6e-10 68.2 132 34.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 8.7e-10 67.8 155 34.2
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.1e-09 67.4 141 33.3
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.1e-09 67.4 129 39.5
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 1.9e-09 66.6 152 35.5
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.5e-09 66.2 163 36.2
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.5e-09 66.2 137 36.5
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 3.3e-09 65.9 107 40.2
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.3e-09 65.9 144 37.5
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.3e-09 65.9 144 37.5
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.3e-09 65.9 151 35.8
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 4.3e-09 65.5 139 33.1
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.3e-09 65.5 136 37.5
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 5.6e-09 65.1 131 38.2
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.6e-09 65.1 117 35.9
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 7.3e-09 64.7 110 39.1
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 9.6e-09 64.3 118 34.7
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.1e-08 63.2 139 33.8
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.1e-08 63.2 142 32.4
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.8e-08 62.8 110 35.5
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.8e-08 62.8 106 33.0
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.8e-08 62.8 111 41.4
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.8e-08 62.8 169 33.7
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 2.8e-08 62.8 82 43.9
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.8e-08 62.8 128 34.4
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 3.6e-08 62.4 143 32.9
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 3.6e-08 62.4 135 34.8
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 4.8e-08 62.0 117 30.8
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 4.8e-08 62.0 106 33.0
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 4.8e-08 62.0 106 33.0
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 4.8e-08 62.0 119 34.5
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 6.2e-08 61.6 107 37.4
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 8.1e-08 61.2 137 29.2
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.4e-07 60.5 142 33.1
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.4e-07 60.5 156 30.8
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.4e-07 60.5 116 36.2
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.8e-07 60.1 144 33.3
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 1.8e-07 60.1 144 33.3
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.8e-07 60.1 106 32.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.8e-07 60.1 106 32.1
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.8e-07 60.1 143 32.2
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.4e-07 59.7 139 30.2
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.4e-07 59.7 139 30.2
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.4e-07 59.7 139 30.2
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 3.1e-07 59.3 143 27.3
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 5.3e-07 58.5 143 27.3
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 6.9e-07 58.2 143 27.3
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 6.9e-07 58.2 157 30.6
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 6.9e-07 58.2 134 32.1
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 9.0e-07 57.8 143 26.6
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 9.0e-07 57.8 143 26.6
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.2e-06 57.4 163 30.7
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 1.2e-06 57.4 132 31.8
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 2.6e-06 56.2 134 31.3
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 3.4e-06 55.8 151 31.1
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 3.4e-06 55.8 163 28.8
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 3.4e-06 55.8 145 30.3
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 3.4e-06 55.8 157 29.3
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.4e-06 55.8 106 36.8
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 3.4e-06 55.8 125 36.0
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 4.5e-06 55.5 124 35.5
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 4.5e-06 55.5 157 29.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 5.8e-06 55.1 151 31.1
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 5.8e-06 55.1 170 29.4


User provided reference genes

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