Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 6.0e-205 717.2 347 100.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.5e-118 428.3 350 65.7
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.6e-117 426.8 350 65.4
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.0e-116 424.1 350 65.7
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 5.3e-113 411.8 361 63.2
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.7e-111 406.8 388 58.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.7e-111 406.8 351 62.1
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 5.0e-111 405.2 351 62.7
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.1e-110 404.1 349 63.3
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.5e-110 403.7 348 62.6
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.5e-110 403.7 352 61.9
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.5e-110 403.7 375 57.3
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 4.2e-110 402.1 353 62.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 5.5e-110 401.7 349 62.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 7.2e-110 401.4 348 62.4
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 9.4e-110 401.0 389 56.3
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.2e-109 400.6 352 62.2
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 2.7e-109 399.4 255 73.3
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.7e-109 398.7 349 61.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 4.7e-109 398.7 260 77.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.0e-108 397.5 353 60.1
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.0e-108 397.5 350 61.7
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.0e-108 397.5 349 61.0
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.8e-108 396.7 349 63.0
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 2.3e-108 396.4 254 75.2
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 2.3e-108 396.4 348 60.9
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 3.0e-108 396.0 349 60.2
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 6.8e-108 394.8 353 61.5
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 8.8e-108 394.4 349 60.2
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.8e-108 394.4 349 60.2
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 8.8e-108 394.4 350 61.1
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.6e-107 392.9 349 60.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 5.7e-107 391.7 350 59.4
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 9.8e-107 391.0 355 58.6
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 9.8e-107 391.0 351 60.7
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.3e-106 390.6 348 62.1
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 2.2e-106 389.8 387 55.3
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.2e-106 389.8 348 60.1
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.8e-106 389.4 348 62.1
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 4.8e-106 388.7 349 61.0
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 8.3e-106 387.9 352 59.4
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.4e-105 387.1 355 60.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.8e-105 386.7 350 60.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.8e-105 386.7 351 60.4
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 3.1e-105 386.0 362 57.2
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 3.1e-105 386.0 387 55.6
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 4.1e-105 385.6 354 60.7
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.2e-104 384.0 253 72.7
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.2e-104 384.0 253 72.7
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.6e-104 383.6 350 60.3
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.0e-104 383.3 253 72.7
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 4.5e-104 382.1 356 59.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.7e-103 380.2 352 56.5
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 5.0e-103 378.6 349 60.2
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.5e-102 377.1 394 53.6
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.5e-102 376.3 380 56.3
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.3e-102 375.9 348 58.9
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.1e-101 373.2 326 63.2
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.8e-101 372.9 374 55.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.8e-101 372.9 357 58.8
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.6e-101 372.5 349 58.2
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 3.6e-101 372.5 265 69.8
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 4.7e-101 372.1 349 57.6
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 8.0e-101 371.3 356 55.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.8e-100 370.2 352 57.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 2.3e-100 369.8 350 58.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.3e-100 369.8 351 56.1
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 5.2e-100 368.6 381 55.1
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 8.9e-100 367.9 323 58.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.2e-99 367.5 350 56.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.2e-99 367.5 392 53.1
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.0e-99 366.7 354 59.0
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.6e-99 366.3 353 57.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.3e-98 364.0 354 56.5
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.7e-98 363.6 352 56.8
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.9e-98 362.1 354 57.1
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.1e-97 360.9 353 57.5
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 4.1e-97 359.0 349 56.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 4.1e-97 359.0 351 57.0
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 2.7e-96 356.3 359 56.0
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.3e-95 354.0 361 53.7
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 2.3e-95 353.2 348 55.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 5.0e-95 352.1 361 55.4
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.5e-94 350.5 379 53.6
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 5.6e-94 348.6 328 54.6
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.1e-93 346.7 311 59.2
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 5.8e-91 338.6 351 52.4
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 9.8e-91 337.8 365 54.8
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.1e-89 334.3 380 51.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 5.4e-89 332.0 348 50.9
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.6e-88 330.5 353 51.8
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.0e-88 330.1 351 51.6
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 2.7e-88 329.7 279 55.2
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.9e-86 323.6 349 50.4
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 3.3e-86 322.8 348 49.7
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 9.8e-83 311.2 306 55.9
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.2e-82 310.1 304 55.9
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 3.2e-81 306.2 265 55.1
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-80 304.3 348 48.0
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.2e-80 304.3 348 48.0
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.1e-80 303.5 348 48.0
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 2.7e-80 303.1 214 69.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 6.0e-80 302.0 207 70.5
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 7.8e-80 301.6 348 47.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.0e-79 301.2 333 53.8
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 3.9e-79 299.3 348 46.8
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.2e-77 294.3 349 47.0
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.1e-77 293.5 348 47.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 3.6e-77 292.7 348 47.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.8e-76 290.4 348 45.4
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.6e-75 286.6 348 45.7
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.4e-75 286.2 382 45.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 7.6e-75 285.0 413 44.1
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.7e-74 282.7 358 48.0
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 8.3e-74 281.6 256 58.6
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.1e-72 276.9 174 75.9
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 2.5e-70 270.0 262 56.1
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 6.2e-69 265.4 262 51.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.9e-66 255.8 319 46.4
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 9.6e-62 241.5 337 41.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.2e-57 226.1 149 70.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.3e-53 214.5 156 66.0
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.9e-50 203.4 150 68.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.3e-47 193.7 153 62.1
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.9e-42 176.8 211 52.6
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.7e-40 170.2 254 38.6
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.4e-33 147.9 109 64.2
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.7e-32 143.7 118 59.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.3e-29 134.8 86 73.3
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.5e-25 119.4 99 59.6
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 2.0e-22 110.9 148 52.7
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 4.8e-21 106.3 96 54.2
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.0e-18 98.6 58 69.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 8.5e-18 95.5 147 46.3
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.4e-15 88.2 53 75.5
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.8e-12 77.8 55 72.7
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.8e-12 77.8 44 79.5
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 7.0e-12 75.9 49 69.4
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-10 71.2 51 64.7


User provided reference genes

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