Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 3.5e-183 644.8 325 100.0
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 2.5e-88 329.7 276 60.5
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 4.3e-88 328.9 267 62.5
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 2.3e-86 323.2 275 59.3
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 3.4e-85 319.3 269 62.8
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 9.8e-85 317.8 264 61.0
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 6.4e-84 315.1 265 60.8
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 6.4e-84 315.1 264 60.6
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 3.2e-83 312.8 262 61.1
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 3.2e-83 312.8 269 59.9
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 4.6e-82 308.9 279 59.9
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 4.6e-82 308.9 269 58.0
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 6.0e-82 308.5 267 60.3
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 1.3e-81 307.4 271 57.2
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.7e-81 307.0 269 58.0
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 1.7e-81 307.0 275 58.2
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 5.1e-81 305.4 258 62.8
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 6.6e-81 305.1 265 59.2
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.1e-80 304.3 269 58.4
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 1.1e-80 304.3 262 58.8
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 1.1e-80 304.3 267 61.0
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 2.5e-80 303.1 268 60.4
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 5.6e-80 302.0 269 57.2
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.6e-79 300.4 262 58.4
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 2.1e-79 300.1 261 59.8
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 2.1e-79 300.1 266 59.4
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 6.2e-79 298.5 254 59.4
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 6.2e-79 298.5 277 57.0
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 1.4e-78 297.4 265 61.1
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 4.0e-78 295.8 274 56.9
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 5.2e-78 295.4 271 56.8
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 6.8e-78 295.0 268 60.1
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 6.8e-78 295.0 263 58.6
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 1.5e-77 293.9 267 55.4
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 2.6e-77 293.1 267 56.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 4.4e-77 292.4 263 59.3
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 4.4e-77 292.4 266 60.2
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 4.4e-77 292.4 263 59.3
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 4.4e-77 292.4 260 58.5
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 5.8e-77 292.0 263 59.3
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 5.8e-77 292.0 255 61.2
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 7.6e-77 291.6 272 56.2
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 7.6e-77 291.6 262 57.3
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 1.3e-76 290.8 266 59.8
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 1.7e-76 290.4 266 56.8
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 2.9e-76 289.7 265 61.9
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 3.8e-76 289.3 293 51.5
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 6.4e-76 288.5 262 56.9
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.4e-76 288.5 271 56.1
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.4e-76 288.5 271 56.1
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 8.4e-76 288.1 267 58.8
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 8.4e-76 288.1 272 57.7
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 8.4e-76 288.1 265 58.9
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 8.4e-76 288.1 265 57.7
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 8.4e-76 288.1 261 55.9
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 1.1e-75 287.7 271 55.7
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 1.4e-75 287.3 265 56.2
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 1.4e-75 287.3 267 59.6
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 1.9e-75 287.0 270 55.9
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.4e-75 286.6 262 56.5
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 3.2e-75 286.2 263 57.0
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 3.2e-75 286.2 267 56.6
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 5.4e-75 285.4 256 60.5
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 5.4e-75 285.4 263 57.0
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.2e-74 284.3 262 56.1
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 1.6e-74 283.9 263 58.2
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 2.1e-74 283.5 260 58.5
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.1e-74 283.5 282 54.3
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.7e-74 283.1 258 56.6
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 6.0e-74 282.0 266 55.6
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 7.8e-74 281.6 271 53.5
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 2.3e-73 280.0 262 54.6
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 1.9e-72 276.9 274 55.1
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 3.3e-72 276.2 271 53.9
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 4.3e-72 275.8 267 56.9
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 7.3e-72 275.0 251 56.6
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.2e-71 274.2 244 59.8
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.8e-71 273.1 270 53.3
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.4e-70 270.8 266 54.1
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 3.1e-70 269.6 256 53.9
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.2e-69 267.7 250 58.0
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 4.4e-69 265.8 258 53.1
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 4.4e-69 265.8 266 53.4
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.2e-68 263.5 280 52.5
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 2.2e-68 263.5 252 56.7
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 6.4e-68 261.9 253 56.9
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 1.6e-66 257.3 239 59.0
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 8.7e-65 251.5 268 51.1
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 9.6e-64 248.1 239 56.1
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 2.0e-61 240.4 277 47.7
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 1.5e-56 224.2 188 60.1
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 4.3e-56 222.6 178 63.5
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 5.6e-56 222.2 269 46.8
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 2.8e-55 219.9 253 48.2
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 4.8e-55 219.2 265 44.2
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 8.4e-52 208.4 180 58.3
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 9.3e-51 204.9 262 46.9
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 7.9e-50 201.8 227 48.9
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.0e-49 201.4 213 50.2
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 3.0e-49 199.9 300 41.0
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.1e-48 198.0 281 42.0
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 4.3e-48 196.1 205 51.2
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 2.8e-47 193.4 173 56.6
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 7.6e-45 185.3 195 55.9
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 4.2e-43 179.5 260 41.2
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 7.9e-42 175.3 166 54.8
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 6.9e-38 162.2 112 67.0
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 6.1e-34 149.1 152 53.9
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 7.9e-34 148.7 111 62.2
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.3e-32 143.3 103 65.0
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 8.2e-31 138.7 166 47.6
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 6.9e-30 135.6 274 32.5
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 2.9e-28 130.2 255 36.5
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 9.4e-27 125.2 327 31.2
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 7.9e-26 122.1 169 41.4
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.3e-22 109.4 108 52.8
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.6e-21 107.1 166 38.6
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.9e-19 100.9 182 38.5
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 7.2e-19 99.0 107 47.7
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 2.7e-18 97.1 70 62.9
ATR0081G033 Amborella trichopoda HOM05D005679 ORTHO05D007228 8.8e-17 92.0 53 88.7
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.6e-16 90.5 192 31.8
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 1.1e-14 85.1 61 65.6
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 3.1e-14 83.6 106 43.4
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 3.2e-11 73.6 106 45.3
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 5.2e-09 66.2 43 65.1
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 8.8e-09 65.5 60 55.0
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.5e-08 64.7 43 62.8


User provided reference genes

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