Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 1.4e-26 122.1 58 100.0
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 1.0e-21 105.9 56 82.1
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 3.1e-21 104.4 56 87.5
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 3.1e-21 104.4 56 87.5
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 5.2e-21 103.6 56 87.5
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 6.8e-21 103.2 56 85.7
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 8.9e-21 102.8 56 83.9
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 1.2e-20 102.4 56 82.1
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.2e-20 102.4 57 78.9
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 1.2e-20 102.4 56 82.1
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.5e-20 102.1 57 78.9
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.5e-20 102.1 56 83.9
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 1.5e-20 102.1 56 83.9
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 2.0e-20 101.7 56 83.9
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 2.0e-20 101.7 56 82.1
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 2.6e-20 101.3 56 80.4
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 3.4e-20 100.9 56 80.4
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 3.4e-20 100.9 56 83.9
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.4e-20 100.9 56 82.1
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.4e-20 100.9 56 82.1
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.4e-20 100.9 56 82.1
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 4.4e-20 100.5 56 82.1
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 7.5e-20 99.8 56 80.4
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 7.5e-20 99.8 56 82.1
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 7.5e-20 99.8 56 82.1
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 7.5e-20 99.8 56 82.1
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 7.5e-20 99.8 56 80.4
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 9.8e-20 99.4 56 80.4
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 9.8e-20 99.4 56 78.6
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 9.8e-20 99.4 56 82.1
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 9.8e-20 99.4 56 82.1
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 9.8e-20 99.4 55 81.8
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 80.4
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 78.6
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 80.4
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 1.3e-19 99.0 56 82.1
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.7e-19 98.6 56 76.8
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 1.7e-19 98.6 56 78.6
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.7e-19 98.6 56 80.4
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 1.7e-19 98.6 56 80.4
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 1.7e-19 98.6 56 78.6
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 75.0
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 78.6
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 78.6
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 82.1
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 80.4
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 80.4
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 78.6
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 2.2e-19 98.2 56 82.1
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 80.4
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 80.4
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 78.6
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 78.6
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 78.6
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 2.9e-19 97.8 56 76.8
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.7e-19 97.4 56 75.0
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 3.7e-19 97.4 56 78.6
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 4.9e-19 97.1 56 76.8
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 4.9e-19 97.1 56 76.8
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 4.9e-19 97.1 56 80.4
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 4.9e-19 97.1 56 75.0
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 4.9e-19 97.1 56 80.4
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 4.9e-19 97.1 56 76.8
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 6.4e-19 96.7 56 75.0
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 6.4e-19 96.7 56 75.0
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 6.4e-19 96.7 56 76.8
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 6.4e-19 96.7 56 75.0
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 6.4e-19 96.7 56 75.0
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 8.3e-19 96.3 56 76.8
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 8.3e-19 96.3 56 76.8
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 8.3e-19 96.3 56 78.6
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 8.3e-19 96.3 56 76.8
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.1e-18 95.9 56 75.0
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.4e-18 95.5 56 75.0
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 1.4e-18 95.5 56 75.0
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 1.4e-18 95.5 56 75.0
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 1.9e-18 95.1 56 71.4
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 1.9e-18 95.1 56 78.6
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 2.4e-18 94.7 56 73.2
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 3.2e-18 94.4 56 76.8
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.2e-18 94.4 56 75.0
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 3.2e-18 94.4 56 75.0
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 3.2e-18 94.4 56 75.0
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 3.2e-18 94.4 56 78.6
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 4.1e-18 94.0 56 75.0
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 5.4e-18 93.6 56 73.2
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 5.4e-18 93.6 56 75.0
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.2e-17 92.4 56 78.6
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 2.0e-17 91.7 56 73.2
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 2.7e-17 91.3 52 78.8
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 2.7e-17 91.3 52 78.8
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 4.6e-17 90.5 52 76.9
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.6e-17 90.5 56 76.8
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 7.8e-17 89.7 52 76.9
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.3e-16 89.0 56 71.4
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 2.3e-16 88.2 56 76.8
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.9e-16 87.4 55 74.5
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 5.0e-16 87.0 52 76.9
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 6.6e-16 86.7 56 71.4
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 1.9e-15 85.1 56 67.9
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 4.3e-15 84.0 49 75.5
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 9.5e-15 82.8 56 66.1
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 1.6e-14 82.0 52 71.2
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 1.4e-13 79.0 44 84.1
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.8e-13 78.6 56 64.3
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 8.9e-13 76.3 56 60.7
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 2.6e-12 74.7 52 67.3
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.3e-11 72.4 50 70.0
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 3.7e-11 70.9 56 60.7
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 8.3e-11 69.7 54 63.0
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 1.6e-09 65.5 56 48.2
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 2.3e-08 61.6 51 54.9
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 7.3e-07 56.6 50 58.0
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 1.2e-06 55.8 56 42.9


User provided reference genes

Program Settings