Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.7e-119 432.6 207 100.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.0e-63 247.3 178 64.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.6e-59 233.4 176 60.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.6e-59 233.4 176 62.5
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.6e-59 233.4 175 58.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.0e-59 233.0 176 62.5
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.5e-59 232.3 178 60.1
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 3.5e-59 232.3 176 60.2
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.9e-59 231.5 181 59.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.0e-58 230.7 176 61.4
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.0e-58 230.7 174 61.5
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.3e-58 230.3 204 52.9
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.3e-58 230.3 173 60.1
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.7e-58 229.9 166 62.0
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 2.2e-58 229.6 178 59.0
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.8e-58 228.8 178 59.6
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.8e-58 228.8 167 62.3
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 5.0e-58 228.4 167 64.1
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.5e-57 226.9 179 59.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.5e-57 226.9 176 59.1
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.5e-57 226.1 158 65.2
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 3.2e-57 225.7 173 61.3
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 5.5e-57 224.9 173 60.7
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.2e-57 224.6 176 58.0
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.6e-56 223.4 176 56.8
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.6e-56 223.4 173 57.8
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.6e-56 223.4 173 60.7
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.6e-56 223.4 190 55.3
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.6e-56 223.4 168 60.1
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.6e-56 223.4 169 58.0
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.1e-56 223.0 207 52.2
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.1e-56 223.0 174 60.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.1e-56 223.0 173 57.2
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 4.7e-56 221.9 173 59.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 6.1e-56 221.5 173 57.2
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 6.1e-56 221.5 162 62.3
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 6.1e-56 221.5 173 60.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 8.0e-56 221.1 176 56.8
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.0e-55 220.7 178 57.9
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.4e-55 220.3 168 60.7
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.4e-55 220.3 174 59.8
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.8e-55 219.9 204 52.0
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 4.0e-55 218.8 166 60.2
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.0e-55 218.8 199 53.8
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 8.8e-55 217.6 176 55.1
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.2e-54 217.2 204 51.0
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-54 216.9 179 58.1
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.6e-54 216.1 199 52.3
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.4e-54 215.7 179 59.2
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.7e-53 213.4 167 57.5
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.2e-53 213.0 178 55.1
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.8e-53 212.6 204 52.0
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 6.3e-53 211.5 156 63.5
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.3e-53 211.5 174 55.7
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.4e-52 210.3 151 60.9
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.1e-52 209.1 210 51.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 4.1e-52 208.8 168 56.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 7.0e-52 208.0 182 56.6
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 7.0e-52 208.0 176 51.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.2e-51 207.2 172 52.9
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.2e-51 207.2 176 52.8
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.7e-51 206.1 166 55.4
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 3.5e-51 205.7 176 53.4
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 4.5e-51 205.3 165 53.3
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 4.5e-51 205.3 165 53.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 4.5e-51 205.3 176 54.5
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 5.9e-51 204.9 175 51.4
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 7.7e-51 204.5 166 55.4
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-50 203.8 165 53.3
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.3e-50 203.0 178 51.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.3e-50 203.0 146 64.4
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.9e-50 202.6 181 53.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 6.5e-50 201.4 178 51.1
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.5e-49 200.3 155 61.9
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-49 200.3 166 53.6
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.9e-49 199.9 173 52.6
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 4.2e-49 198.7 161 55.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 5.5e-49 198.4 175 50.3
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.2e-49 198.0 190 54.7
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 9.5e-49 197.6 171 54.4
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 9.5e-49 197.6 159 54.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-48 197.2 175 49.7
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.1e-48 196.4 175 50.3
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.1e-48 196.4 164 54.9
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 8.0e-48 194.5 175 48.6
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 8.0e-48 194.5 175 48.6
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.0e-47 194.1 175 49.1
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.4e-47 193.7 175 49.1
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.4e-47 193.7 154 61.7
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.4e-47 193.7 175 49.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.8e-47 193.4 175 47.4
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.8e-47 193.4 161 52.8
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.3e-47 193.0 133 61.7
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-47 192.6 175 49.1
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.0e-47 192.6 175 49.1
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 8.9e-47 191.0 168 54.8
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.2e-46 190.7 175 48.0
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-46 190.7 175 49.1
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-46 190.7 169 49.1
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-46 190.3 175 47.4
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-46 189.9 175 48.6
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.6e-46 189.5 175 48.6
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.6e-46 189.5 169 48.5
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.6e-46 189.5 175 48.6
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.4e-46 188.7 204 46.6
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 9.8e-46 187.6 168 50.0
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.3e-45 187.2 157 53.5
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.3e-45 187.2 196 49.0
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 4.9e-45 185.3 179 53.1
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 8.3e-45 184.5 167 52.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.4e-44 183.7 171 48.5
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 3.1e-44 182.6 168 48.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 5.9e-43 178.3 141 58.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.3e-42 176.4 194 44.3
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 5.0e-42 175.3 107 67.3
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 5.0e-42 175.3 152 55.3
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 8.6e-42 174.5 166 49.4
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.5e-41 173.7 192 51.6
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 4.7e-40 168.7 147 49.0
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.4e-39 167.2 174 46.6
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.8e-39 166.8 196 41.8
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.3e-39 166.4 139 51.1
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.4e-37 158.3 157 52.2
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.9e-36 156.8 105 64.8
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.6e-35 153.7 105 61.0
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.9e-33 146.7 161 46.0
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 9.8e-30 134.4 166 45.8
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 4.6e-27 125.6 185 37.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.3e-26 123.2 166 42.8
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.9e-25 120.2 162 43.2
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.1e-24 116.7 90 62.2
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.6e-24 115.9 85 52.9
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.9e-21 106.3 70 61.4
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.7e-16 89.0 58 62.1
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 8.1e-16 88.2 61 55.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 3.1e-15 86.3 84 45.2
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 8.9e-15 84.7 53 60.4
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.8e-13 79.3 63 46.0
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-12 77.4 63 47.6
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.4e-12 76.6 69 58.0
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.2e-11 74.3 123 38.2
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 7.8e-11 71.6 50 64.0
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.7e-10 70.5 52 59.6
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.3e-10 70.1 72 54.2
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 4.3e-09 65.9 46 56.5
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 7.3e-09 65.1 51 56.9
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 1.4e-07 60.8 149 29.5
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.0e-07 59.3 52 53.8
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 5.8e-06 55.5 26 76.9


User provided reference genes

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