Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 2.6e-80 302.0 153 100.0
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 8.6e-39 164.1 91 87.9
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 4.4e-19 98.6 59 79.7
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 9.8e-19 97.4 81 61.7
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.3e-18 97.1 64 70.3
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.3e-18 97.1 51 84.3
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.2e-18 96.3 64 67.2
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.2e-18 96.3 47 89.4
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.2e-18 96.3 73 67.1
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 2.2e-18 96.3 58 75.9
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 2.9e-18 95.9 58 75.9
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 2.9e-18 95.9 61 70.5
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 2.9e-18 95.9 59 76.3
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.9e-18 95.9 58 75.9
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 2.9e-18 95.9 91 56.0
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 3.7e-18 95.5 70 65.7
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.7e-18 95.5 51 82.4
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.7e-18 95.5 51 82.4
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 3.7e-18 95.5 51 80.4
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 3.7e-18 95.5 91 54.9
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.7e-18 95.5 58 75.9
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 4.9e-18 95.1 60 71.7
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 4.9e-18 95.1 69 68.1
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 4.9e-18 95.1 56 75.0
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 4.9e-18 95.1 70 65.7
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 4.9e-18 95.1 92 55.4
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 4.9e-18 95.1 81 56.8
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 4.9e-18 95.1 62 72.6
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 6.4e-18 94.7 62 71.0
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 6.4e-18 94.7 63 71.4
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 6.4e-18 94.7 54 77.8
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 8.3e-18 94.4 51 78.4
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 8.3e-18 94.4 56 75.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 8.3e-18 94.4 61 70.5
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 8.3e-18 94.4 86 59.3
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 1.1e-17 94.0 54 74.1
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.1e-17 94.0 94 54.3
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.1e-17 94.0 94 54.3
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.1e-17 94.0 46 89.1
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-17 94.0 53 75.5
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 1.1e-17 94.0 101 52.5
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.1e-17 94.0 81 56.8
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.4e-17 93.6 69 63.8
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-17 93.6 63 69.8
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.4e-17 93.6 63 71.4
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.4e-17 93.6 75 61.3
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.4e-17 93.6 92 53.3
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 1.4e-17 93.6 45 86.7
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.4e-17 93.6 69 63.8
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.9e-17 93.2 70 65.7
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.9e-17 93.2 63 68.3
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.9e-17 93.2 53 77.4
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.9e-17 93.2 91 56.0
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.9e-17 93.2 54 74.1
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 1.9e-17 93.2 67 71.6
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.9e-17 93.2 92 56.5
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.9e-17 93.2 81 56.8
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.9e-17 93.2 72 61.1
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.9e-17 93.2 59 72.9
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.4e-17 92.8 51 76.5
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.4e-17 92.8 49 79.6
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.4e-17 92.8 77 57.1
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 2.4e-17 92.8 56 73.2
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 2.4e-17 92.8 56 73.2
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 2.4e-17 92.8 84 58.3
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.4e-17 92.8 59 72.9
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.4e-17 92.8 59 72.9
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.4e-17 92.8 49 79.6
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.4e-17 92.8 92 54.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.4e-17 92.8 65 72.3
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.4e-17 92.8 75 60.0
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.2e-17 92.4 62 69.4
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 3.2e-17 92.4 49 79.6
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 3.2e-17 92.4 57 73.7
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 3.2e-17 92.4 61 68.9
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 3.2e-17 92.4 61 68.9
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 3.2e-17 92.4 52 76.9
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.1e-17 92.0 91 54.9
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 5.4e-17 91.7 63 66.7
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.4e-17 91.7 70 65.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.4e-17 91.7 59 71.2
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.4e-17 91.7 86 58.1
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 5.4e-17 91.7 72 62.5
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 5.4e-17 91.7 51 80.4
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 5.4e-17 91.7 92 52.2
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 5.4e-17 91.7 92 52.2
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 7.1e-17 91.3 51 74.5
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 7.1e-17 91.3 63 66.7
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 7.1e-17 91.3 59 72.9
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 7.1e-17 91.3 71 63.4
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 7.1e-17 91.3 66 63.6
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 7.1e-17 91.3 91 54.9
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.1e-17 91.3 66 66.7
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 7.1e-17 91.3 66 66.7
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 7.1e-17 91.3 48 79.2
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 7.1e-17 91.3 70 64.3
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 7.1e-17 91.3 66 65.2
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 7.1e-17 91.3 68 63.2
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 9.2e-17 90.9 49 77.6
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 9.2e-17 90.9 87 57.5
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 9.2e-17 90.9 59 71.2
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 9.2e-17 90.9 49 79.6
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 9.2e-17 90.9 76 57.9
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.2e-16 90.5 77 54.5
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.2e-16 90.5 45 84.4
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 1.2e-16 90.5 54 74.1
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-16 90.5 63 69.8
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-16 90.5 63 69.8
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.2e-16 90.5 63 69.8
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-16 90.5 61 67.2
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.2e-16 90.5 55 70.9
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.2e-16 90.5 71 60.6
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.2e-16 90.5 46 84.8
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.2e-16 90.5 46 84.8
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.6e-16 90.1 51 74.5
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.6e-16 90.1 78 56.4
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.6e-16 90.1 91 54.9
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.6e-16 90.1 51 72.5
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 1.6e-16 90.1 59 69.5
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.6e-16 90.1 66 63.6
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 2.1e-16 89.7 51 74.5
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 2.1e-16 89.7 78 56.4
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 2.1e-16 89.7 91 54.9
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 2.7e-16 89.4 61 65.6
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 2.7e-16 89.4 61 65.6
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.7e-16 89.4 49 77.6
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 4.6e-16 88.6 94 51.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 4.6e-16 88.6 66 60.6
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 6.0e-16 88.2 62 69.4
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 7.8e-16 87.8 51 72.5
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 7.8e-16 87.8 92 53.3
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.0e-15 87.4 87 50.6
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.3e-15 87.0 61 63.9
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.3e-15 87.0 61 63.9
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.3e-15 87.0 81 53.1
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.3e-15 87.0 81 53.1
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.3e-15 87.0 81 53.1
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.7e-15 86.7 83 53.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.3e-15 86.3 80 55.0
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.3e-15 86.3 66 65.2
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 5.1e-15 85.1 71 57.7
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 6.6e-15 84.7 48 75.0
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 8.6e-15 84.3 86 50.0
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 8.6e-15 84.3 42 81.0
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 8.6e-15 84.3 60 68.3
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.5e-14 83.6 66 62.1
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.5e-14 82.8 56 69.6
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.5e-14 82.8 56 69.6
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.2e-11 73.9 77 53.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.2e-11 73.9 49 63.3
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.1e-09 67.4 48 66.7
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 1.1e-09 67.4 47 66.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 5.1e-07 58.5 32 75.0


User provided reference genes

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