Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G404 Amborella trichopoda HOM05D002477 ORTHO05D001927 3.8e-183 644.8 347 100.0
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 3.4e-19 100.1 107 52.3
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 7.4e-14 82.4 76 56.6
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 9.7e-14 82.0 188 32.4
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 1.7e-13 81.3 110 40.9
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.2e-13 80.9 103 47.6
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.7e-13 80.1 108 43.5
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.7e-13 80.1 108 43.5
Cc05_g09830 Coffea canephora HOM05D002477 ORTHO05D001927 3.7e-13 80.1 88 47.7
Potri.006G054401 Populus trichocarpa HOM05D002477 ORTHO05D001927 3.7e-13 80.1 89 47.2
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 4.8e-13 79.7 91 44.0
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 4.8e-13 79.7 95 48.4
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 8.2e-13 79.0 73 57.5
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.1e-12 78.6 97 48.5
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.1e-12 78.6 119 39.5
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 3.1e-12 77.0 110 45.5
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.2e-11 75.1 87 49.4
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 2.6e-11 73.9 76 52.6
Actinidia35194 Actinidia chinensis HOM05D002477 ORTHO05D001927 3.5e-11 73.6 70 51.4
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 4.5e-11 73.2 91 41.8
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 5.9e-11 72.8 106 42.5
vmacro09463 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 5.9e-11 72.8 69 53.6
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 5.9e-11 72.8 88 46.6
arahy.Tifrunner.gnm1.ann1.PI38UG Arachis hypogaea HOM05D002477 ORTHO05D001927 7.7e-11 72.4 58 56.9
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 7.7e-11 72.4 93 44.1
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 7.7e-11 72.4 67 52.2
Glyma.15G236400 Glycine max HOM05D002477 ORTHO05D001927 7.7e-11 72.4 76 47.4
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.3e-10 71.6 109 41.3
Manes.18G010900 Manihot esculenta HOM05D002477 ORTHO05D001927 1.3e-10 71.6 82 43.9
Sc21g0000360 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.3e-10 71.6 57 59.6
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 1.7e-10 71.2 58 56.9
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 1.7e-10 71.2 94 43.6
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 1.7e-10 71.2 113 38.9
Atru.chr1.1043 Acer truncatum HOM05D002477 ORTHO05D001927 2.9e-10 70.5 76 50.0
CiPaw.03G284600 Carya illinoinensis HOM05D002477 ORTHO05D001927 3.8e-10 70.1 99 39.4
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 3.8e-10 70.1 113 38.1
PGR042G2775 Punica granatum HOM05D002477 ORTHO05D001927 3.8e-10 70.1 91 39.6
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 3.8e-10 70.1 100 40.0
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 5.0e-10 69.7 75 48.0
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 6.5e-10 69.3 59 55.9
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 6.5e-10 69.3 59 55.9
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 6.5e-10 69.3 59 57.6
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 6.5e-10 69.3 89 44.9
VMungo1127G0424 Vigna mungo HOM05D002477 ORTHO05D001927 6.5e-10 69.3 69 47.8
Glyma.13G197800 Glycine max HOM05D002477 ORTHO05D001927 8.5e-10 68.9 62 51.6
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 1.5e-09 68.2 103 38.8
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 1.5e-09 68.2 117 39.3
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.5e-09 68.2 56 58.9
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 1.5e-09 68.2 61 52.5
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.5e-09 68.2 70 48.6
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 1.9e-09 67.8 77 45.5
Thecc.01G201900 Theobroma cacao HOM05D002477 ORTHO05D001927 1.9e-09 67.8 91 39.6
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 1.9e-09 67.8 109 35.8
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 2.5e-09 67.4 58 55.2
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.5e-09 67.4 75 45.3
arahy.Tifrunner.gnm1.ann1.NH26IS Arachis hypogaea HOM05D002477 ORTHO05D001927 3.2e-09 67.0 58 51.7
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 3.2e-09 67.0 59 52.5
SEGI_31108 Sequoiadendron giganteum HOM05D002477 ORTHO05D001927 3.2e-09 67.0 87 40.2
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 4.2e-09 66.6 63 50.8
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 4.2e-09 66.6 95 43.2
SalBow5G2191 Salvia bowleyana HOM05D002477 ORTHO05D001927 4.2e-09 66.6 59 55.9
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 5.5e-09 66.2 91 38.5
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 5.5e-09 66.2 91 38.5
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 5.5e-09 66.2 64 48.4
Oeu051541.1 Olea europaea HOM05D002477 ORTHO05D001927 5.5e-09 66.2 56 55.4
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 7.2e-09 65.9 62 48.4
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 7.2e-09 65.9 59 52.5
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 7.2e-09 65.9 84 42.9
EL10Ac9g22351 Beta vulgaris HOM05D002477 ORTHO05D001927 9.4e-09 65.5 107 36.4
Ca_16324_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 9.4e-09 65.5 56 55.4
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 9.4e-09 65.5 64 46.9
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 9.4e-09 65.5 99 42.4
ClCG02G003110 Citrullus lanatus HOM05D002477 ORTHO05D001927 1.2e-08 65.1 56 53.6
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.2e-08 65.1 56 53.6
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 1.2e-08 65.1 56 51.8
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 1.2e-08 65.1 91 44.0
COL.COLO4_19698 Corchorus olitorius HOM05D002477 ORTHO05D001927 1.6e-08 64.7 57 54.4
Mapoly0084s0085 Marchantia polymorpha HOM05D002477 ORTHO05D001927 1.6e-08 64.7 58 51.7
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 1.6e-08 64.7 87 46.0
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 2.1e-08 64.3 102 41.2
Gohir.A11G146700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.7e-08 63.9 107 36.4
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 3.6e-08 63.5 97 41.2
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 3.6e-08 63.5 130 34.6
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 4.7e-08 63.2 91 40.7
Gohir.D11G153400 Gossypium hirsutum HOM05D002477 ORTHO05D001927 6.1e-08 62.8 107 35.5
PGR044G1376 Punica granatum HOM05D002477 ORTHO05D001927 6.1e-08 62.8 63 49.2
TWI36G1687 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 6.1e-08 62.8 58 48.3
Gohir.A07G088300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 8.0e-08 62.4 57 54.4
Gorai.001G100000 Gossypium raimondii HOM05D002477 ORTHO05D001927 8.0e-08 62.4 57 54.4
Nitab4.5_0007468g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 8.0e-08 62.4 59 52.5
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 8.0e-08 62.4 56 51.8
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 8.0e-08 62.4 50 56.0
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.0e-07 62.0 59 50.8
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.0e-07 62.0 104 39.4
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.0e-07 62.0 57 54.4
Gorai.007G163600 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.0e-07 62.0 107 35.5
Hund08100 Selenicereus undatus HOM05D002477 ORTHO05D001927 1.0e-07 62.0 93 39.8
AUR62025099 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.4e-07 61.6 104 40.4
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 1.4e-07 61.6 59 49.2
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 1.4e-07 61.6 63 49.2
Lj5g0016725 Lotus japonicus HOM05D002477 ORTHO05D001927 1.4e-07 61.6 63 49.2
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.4e-07 61.6 88 45.5
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.8e-07 61.2 50 50.0
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 1.8e-07 61.2 50 56.0
Lj6g0015125 Lotus japonicus HOM05D002477 ORTHO05D001927 1.8e-07 61.2 92 35.9
Potri.002G005600 Populus trichocarpa HOM05D002477 ORTHO05D001927 1.8e-07 61.2 57 52.6
Prupe.3G192500 Prunus persica HOM05D002477 ORTHO05D001927 1.8e-07 61.2 109 33.0
QL02p026723 Quercus lobata HOM05D002477 ORTHO05D001927 1.8e-07 61.2 85 40.0
QL93p2012_0015 Quercus lobata HOM05D002477 ORTHO05D001927 1.8e-07 61.2 85 40.0
QL93p2012_0041 Quercus lobata HOM05D002477 ORTHO05D001927 1.8e-07 61.2 85 40.0
AL9U12160 Arabidopsis lyrata HOM05D021191 ORTHO05D001927 2.3e-07 60.8 95 44.2
CANSAT64G2375 Cannabis sativa HOM05D002477 ORTHO05D001927 2.3e-07 60.8 60 48.3
FAN14G4953 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.3e-07 60.8 134 35.1
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.3e-07 60.8 105 37.1
Atru.chr6.3448 Acer truncatum HOM05D002477 ORTHO05D001927 3.0e-07 60.5 58 48.3
CAN.G585.14 Capsicum annuum HOM05D002477 ORTHO05D001927 3.0e-07 60.5 59 49.2
Thhalv10003829m.g Eutrema salsugineum HOM05D021191 ORTHO05D001927 3.0e-07 60.5 78 44.9
Nitab4.5_0001022g0060 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.0e-07 60.5 59 50.8
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 3.0e-07 60.5 105 37.1
RcHm_v2.0_Chr2g0155231 Rosa chinensis HOM05D002477 ORTHO05D001927 3.0e-07 60.5 58 51.7
Sabra02G0004000 Salix brachista HOM05D002477 ORTHO05D001927 3.0e-07 60.5 57 50.9
SEGI_17132 Sequoiadendron giganteum HOM05D002477 ORTHO05D001927 3.0e-07 60.5 87 39.1
BcaC06g30810 Brassica carinata HOM05D001083 ORTHO05D001637 4.0e-07 60.1 62 48.4
FvH4_6g51680 Fragaria vesca HOM05D002477 ORTHO05D001927 4.0e-07 60.1 131 35.1
FAN14G3449 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.0e-07 60.1 131 35.1
Pp3c11_3110 Physcomitrium patens HOM05D025978 ORTHO05D001927 4.0e-07 60.1 74 45.9
Solyc07g056120.3 Solanum lycopersicum HOM05D002477 ORTHO05D001927 4.0e-07 60.1 59 49.2
Sopen07g029480 Solanum pennellii HOM05D002477 ORTHO05D001927 4.0e-07 60.1 59 49.2
PGSC0003DMG400031096 Solanum tuberosum HOM05D002477 ORTHO05D001927 4.0e-07 60.1 59 47.5
C07p39090 Brassica napus HOM05D001083 ORTHO05D001637 5.2e-07 59.7 62 48.4
CARHR218000 Cardamine hirsuta HOM05D021191 ORTHO05D001927 5.2e-07 59.7 78 43.6
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 5.2e-07 59.7 56 53.6
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 5.2e-07 59.7 59 49.2
BolC7t44427H Brassica oleracea HOM05D001083 ORTHO05D001637 6.7e-07 59.3 62 48.4
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 6.7e-07 59.3 105 38.1
ECA246G4940 Erigeron canadensis HOM05D002477 ORTHO05D001927 6.7e-07 59.3 93 39.8
Pp3c7_20880 Physcomitrium patens HOM05D025978 ORTHO05D001927 6.7e-07 59.3 59 49.2
Aa31sc156G30 Aethionema arabicum HOM05D002477 ORTHO05D001927 8.8e-07 58.9 84 40.5
Aqoxy3G04102 Aquilegia oxysepala HOM05D002477 ORTHO05D001927 8.8e-07 58.9 82 39.0
AL1G11350 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 8.8e-07 58.9 56 50.0
PSO675G6033 Papaver somniferum HOM05D002477 ORTHO05D001927 8.8e-07 58.9 59 47.5
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 8.8e-07 58.9 92 37.0
Solyc10g080300.1 Solanum lycopersicum HOM05D002477 ORTHO05D001927 8.8e-07 58.9 105 37.1
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 1.1e-06 58.5 58 48.3
Carub.0006s0269 Capsella rubella HOM05D010575 ORTHO05D001927 1.1e-06 58.5 50 54.0
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.1e-06 58.5 64 50.0
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 1.1e-06 58.5 95 37.9
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 1.1e-06 58.5 55 49.1
AT1G01150 Arabidopsis thaliana HOM05D002477 ORTHO05D031469 1.5e-06 58.2 50 50.0
A06p39250 Brassica napus HOM05D001083 ORTHO05D001637 2.0e-06 57.8 50 52.0
Carub.0007s3029 Capsella rubella HOM05D021191 ORTHO05D001927 2.0e-06 57.8 92 41.3
Thhalv10004420m.g Eutrema salsugineum HOM05D010575 ORTHO05D001927 2.0e-06 57.8 50 54.0
Sp2g18670 Schrenkiella parvula HOM05D010575 ORTHO05D001927 2.0e-06 57.8 87 37.9
BraA06t26839Z Brassica rapa HOM05D001083 ORTHO05D001637 2.6e-06 57.4 62 46.8
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.6e-06 57.4 86 41.9
AL6G13330 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 3.3e-06 57.0 50 52.0
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 3.3e-06 57.0 83 42.2
AT4G12670 Arabidopsis thaliana HOM05D021191 ORTHO05D001927 4.4e-06 56.6 79 41.8
BcaB02g06607 Brassica carinata HOM05D002477 ORTHO05D001927 4.4e-06 56.6 146 34.2
Carub.0001s0106 Capsella rubella HOM05D002477 ORTHO05D001927 4.4e-06 56.6 50 50.0
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 4.4e-06 56.6 63 42.9
Sp7g08980 Schrenkiella parvula HOM05D021191 ORTHO05D001927 4.4e-06 56.6 112 32.1
unitig_62.g23101 Utricularia gibba HOM05D002477 ORTHO05D001927 4.4e-06 56.6 57 40.4
CARHR209510 Cardamine hirsuta HOM05D010575 ORTHO05D001927 7.5e-06 55.8 57 49.1
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 7.5e-06 55.8 80 41.2
MD09G1134000 Malus domestica HOM05D002477 ORTHO05D001927 7.5e-06 55.8 108 28.7
THA.LOC104826636 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 7.5e-06 55.8 69 39.1
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 9.7e-06 55.5 111 33.3
Sp5g00980 Schrenkiella parvula HOM05D010575 ORTHO05D001927 9.7e-06 55.5 89 33.7


User provided reference genes

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