Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 3.8e-290 1000.7 488 100.0
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.8e-269 931.4 485 93.4
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.3e-262 907.9 483 90.5
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.7e-262 907.1 483 89.6
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 5.7e-262 907.1 483 90.5
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.3e-261 906.0 483 88.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 2.2e-261 905.2 483 90.5
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.8e-261 904.8 485 90.1
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 4.8e-261 904.0 483 89.9
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 6.3e-261 903.7 483 90.1
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.1e-260 902.9 484 90.5
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.8e-260 902.1 483 90.1
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.3e-260 900.6 483 90.7
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.6e-259 899.0 483 89.6
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.0e-259 898.7 483 89.6
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.6e-259 898.3 484 89.3
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 2.6e-259 898.3 478 90.0
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.6e-259 898.3 483 89.2
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.6e-259 898.3 483 89.6
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 4.5e-259 897.5 483 89.4
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 7.7e-259 896.7 483 89.9
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 7.7e-259 896.7 483 89.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 7.7e-259 896.7 483 88.6
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.3e-258 896.0 483 89.4
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.7e-258 895.6 483 89.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.7e-258 895.6 484 89.3
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.7e-258 895.6 483 89.4
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.2e-258 895.2 460 93.0
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 2.9e-258 894.8 483 89.4
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 2.9e-258 894.8 483 89.2
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 5.0e-258 894.0 484 89.7
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 6.5e-258 893.6 483 90.1
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 6.5e-258 893.6 482 89.0
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 6.5e-258 893.6 483 88.8
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 8.5e-258 893.3 484 88.6
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 8.5e-258 893.3 484 88.8
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 8.5e-258 893.3 484 88.8
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.1e-257 892.9 483 88.8
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.1e-257 892.9 487 89.3
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.5e-257 892.5 484 89.3
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.9e-257 892.1 483 88.4
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.9e-257 892.1 483 89.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.9e-257 892.1 482 90.2
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.9e-257 892.1 483 89.4
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 2.5e-257 891.7 483 89.4
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 2.5e-257 891.7 485 89.9
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 2.5e-257 891.7 484 89.0
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 3.2e-257 891.3 484 88.8
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 4.2e-257 891.0 482 89.2
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.5e-257 890.6 483 88.8
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 5.5e-257 890.6 483 89.4
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 5.5e-257 890.6 481 88.8
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.2e-257 890.2 483 89.6
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 7.2e-257 890.2 483 89.0
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 7.2e-257 890.2 483 89.6
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 7.2e-257 890.2 481 88.4
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 9.4e-257 889.8 484 88.8
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 9.4e-257 889.8 484 88.6
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 9.4e-257 889.8 483 89.2
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.2e-256 889.4 484 88.4
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.2e-256 889.4 483 89.0
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.2e-256 889.4 481 88.8
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.2e-256 889.4 473 90.5
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.2e-256 889.4 483 89.9
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.6e-256 889.0 483 89.9
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.6e-256 889.0 483 89.6
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 2.1e-256 888.6 483 89.6
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 2.1e-256 888.6 483 89.6
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 2.1e-256 888.6 483 89.4
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 2.1e-256 888.6 488 89.3
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 2.7e-256 888.3 482 89.8
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 2.7e-256 888.3 483 89.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 3.6e-256 887.9 483 89.6
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 4.7e-256 887.5 483 89.4
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 4.7e-256 887.5 462 92.9
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.0e-255 886.3 481 88.4
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.4e-255 885.9 483 89.4
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.4e-255 885.9 483 88.6
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 1.8e-255 885.6 484 88.6
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.8e-255 885.6 484 88.4
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 2.3e-255 885.2 477 89.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 3.0e-255 884.8 484 89.7
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 4.0e-255 884.4 484 88.2
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 5.2e-255 884.0 477 89.3
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 5.2e-255 884.0 456 93.6
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 6.8e-255 883.6 481 88.6
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 8.8e-255 883.2 485 89.3
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 8.8e-255 883.2 483 88.4
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 8.8e-255 883.2 482 88.6
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.2e-254 882.9 459 91.7
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.2e-254 882.9 481 87.9
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.2e-254 882.9 484 88.2
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 1.5e-254 882.5 485 87.8
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 1.5e-254 882.5 490 88.0
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.6e-254 881.7 489 88.5
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 2.6e-254 881.7 437 95.4
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 3.4e-254 881.3 482 88.0
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 3.4e-254 881.3 484 89.0
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.4e-254 881.3 485 88.5
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 5.7e-254 880.6 462 92.0
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 2.8e-253 878.2 451 93.1
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 4.8e-253 877.5 452 92.7
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 6.3e-253 877.1 483 88.2
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 1.1e-252 876.3 462 91.6
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.4e-252 875.9 484 88.2
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 3.5e-251 871.3 473 88.4
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 3.6e-248 861.3 483 87.2
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.5e-246 855.9 463 89.6
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.7e-245 852.4 433 94.0
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.7e-245 852.4 455 90.8
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.0e-243 845.5 430 93.0
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 2.7e-243 845.1 447 89.5
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.8e-242 841.3 480 83.5
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 2.1e-240 835.5 438 89.7
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 9.8e-238 826.6 432 88.7
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 6.4e-237 823.9 452 85.4
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 9.2e-236 820.1 407 94.8
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 2.7e-235 818.5 407 94.3
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.6e-235 817.8 406 95.3
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.3e-234 816.2 405 95.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.8e-231 805.8 408 92.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 2.2e-229 798.9 429 86.7
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.7e-227 792.0 485 81.2
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.3e-221 773.1 385 95.1
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 2.3e-218 762.3 421 82.7
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 8.6e-218 760.4 427 82.4
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 4.3e-217 758.1 435 81.8
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 1.6e-208 729.6 377 92.3
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.6e-201 704.5 390 87.9
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 3.6e-200 701.8 436 78.9
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 1.1e-188 663.7 366 87.7
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-188 663.3 346 90.8
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 8.1e-184 647.5 395 75.2
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.9e-177 626.3 316 93.7
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.4e-174 615.5 483 67.1
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-165 586.3 483 65.0
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 2.2e-165 586.3 331 87.6
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.5e-165 584.3 483 64.8
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 6.1e-163 578.2 483 64.6
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.0e-146 524.2 279 88.5
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.9e-141 506.1 351 72.9
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 3.8e-125 452.6 274 75.2
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.6e-113 413.3 203 96.1
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.8e-99 366.7 177 94.4
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.7e-96 357.5 222 78.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.7e-93 347.4 173 94.8
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.0e-90 336.3 170 92.4
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.2e-79 299.7 484 40.5
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.3e-75 288.1 146 92.5
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 5.6e-68 262.7 146 86.3
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 6.2e-67 259.2 161 83.2
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.1e-63 248.4 127 89.0
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 4.2e-63 246.5 128 90.6
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.1e-54 217.6 259 44.8
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.7e-54 217.2 144 77.8
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.1e-50 205.3 100 95.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.3e-48 198.4 102 91.2
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.4e-42 177.6 124 73.4
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 3.7e-35 153.7 102 74.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 9.1e-34 149.1 76 90.8
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 9.1e-34 149.1 76 90.8
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.5e-31 139.8 105 64.8
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 1.5e-28 131.7 197 37.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 4.4e-28 130.2 68 91.2
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.8e-27 127.5 70 84.3
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-26 124.4 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-26 124.4 65 89.2
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.1e-26 123.6 68 83.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-24 117.9 65 83.1
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.9e-24 117.5 65 83.1
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.4e-21 108.6 65 80.0
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 5.2e-21 106.7 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 2.6e-20 104.4 67 71.6
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 7.7e-17 92.8 48 89.6
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.6e-14 85.1 168 35.1
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 2.3e-13 81.3 71 57.7
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 6.8e-13 79.7 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.5e-12 78.6 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 9.2e-10 69.3 61 59.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 6.1e-06 56.6 40 65.0


User provided reference genes

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