Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G316 Amborella trichopoda HOM05D031042 ORTHO05D026557 1.3e-48 196.1 99 100.0
ATR1132G093 Amborella trichopoda HOM05D031042 ORTHO05D026557 7.3e-31 137.1 101 70.3
ATR1132G049 Amborella trichopoda HOM05D031042 ORTHO05D026557 6.2e-22 107.5 85 65.9
ATR1132G115 Amborella trichopoda HOM05D031042 ORTHO05D026557 3.7e-19 98.2 101 57.4
SEGI_33630 Sequoiadendron giganteum HOM05D001945 ORTHO05D002048 4.1e-10 68.2 91 40.7
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 7.8e-09 63.9 82 40.2
Lj5g0000576 Lotus japonicus HOM05D002915 ORTHO05D003004 1.3e-08 63.2 81 39.5
Os04g0385600 Oryza sativa ssp. japonica HOM05D001945 ORTHO05D002048 1.3e-08 63.2 87 40.2
Eucgr.B03492 Eucalyptus grandis HOM05D001945 ORTHO05D002048 2.3e-08 62.4 87 37.9
MD16G1169500 Malus domestica HOM05D002915 ORTHO05D003004 2.3e-08 62.4 96 35.4
Lsat_1_v5_gn_3_31140 Lactuca sativa HOM05D001945 ORTHO05D002048 3.9e-08 61.6 87 40.2
Zm00001eb085610 Zea mays HOM05D001945 ORTHO05D002048 3.9e-08 61.6 87 40.2
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 5.1e-08 61.2 82 41.5
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 6.6e-08 60.8 82 39.0
Cc00_g21400 Coffea canephora HOM05D002915 ORTHO05D003004 8.6e-08 60.5 82 40.2
Lj5g0016376 Lotus japonicus HOM05D002915 ORTHO05D003004 8.6e-08 60.5 77 40.3
Os02g0506400 Oryza sativa ssp. japonica HOM05D001945 ORTHO05D002048 8.6e-08 60.5 88 40.9
TWI18G0288 Tripterygium wilfordii HOM05D001945 ORTHO05D002048 8.6e-08 60.5 88 39.8
A07p33940 Brassica napus HOM05D001945 ORTHO05D002048 1.5e-07 59.7 96 36.5
C06p42920 Brassica napus HOM05D001945 ORTHO05D002048 1.5e-07 59.7 96 36.5
BolC6t39146H Brassica oleracea HOM05D001945 ORTHO05D002048 1.5e-07 59.7 96 36.5
BraA07t31021Z Brassica rapa HOM05D001945 ORTHO05D002048 1.5e-07 59.7 96 36.5
CDE05G2068 Ceratophyllum demersum HOM05D001945 ORTHO05D002048 1.5e-07 59.7 88 37.5
BcaC08g46169 Brassica carinata HOM05D001945 ORTHO05D002048 1.9e-07 59.3 96 36.5
BcaB03g15348 Brassica carinata HOM05D001945 ORTHO05D002048 2.5e-07 58.9 86 37.2
BcaC03g14835 Brassica carinata HOM05D001945 ORTHO05D002048 3.3e-07 58.5 86 38.4
BolC2t08439H Brassica oleracea HOM05D001945 ORTHO05D002048 3.3e-07 58.5 86 38.4
CDE05G0615 Ceratophyllum demersum HOM05D001945 ORTHO05D002048 3.3e-07 58.5 88 38.6
Lj4g0018673 Lotus japonicus HOM05D001945 ORTHO05D002048 3.3e-07 58.5 87 37.9
CsaV3_2G025440 Cucumis sativus L. HOM05D001945 ORTHO05D002048 4.3e-07 58.2 88 38.6
TWI36G0603 Tripterygium wilfordii HOM05D001945 ORTHO05D002048 4.3e-07 58.2 88 37.5
Ah.03g136150 Amaranthus hybridus HOM05D001945 ORTHO05D002048 5.6e-07 57.8 88 39.8
Aqoxy1G00479 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 5.6e-07 57.8 84 35.7
Aqoxy1G01229 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 5.6e-07 57.8 82 37.8
A07p32600 Brassica napus HOM05D001945 ORTHO05D002048 5.6e-07 57.8 86 36.0
BraA07t30884Z Brassica rapa HOM05D001945 ORTHO05D002048 5.6e-07 57.8 86 36.0
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 5.6e-07 57.8 87 39.1
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 5.6e-07 57.8 82 37.8
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 5.6e-07 57.8 82 37.8
PGR102G0821 Punica granatum HOM05D001945 ORTHO05D002048 5.6e-07 57.8 87 37.9
Sp5g22290 Schrenkiella parvula HOM05D001945 ORTHO05D002048 5.6e-07 57.8 87 37.9
TPR.G17788 Trifolium pratense HOM05D001945 ORTHO05D002048 5.6e-07 57.8 87 34.5
TWI75G1443 Tripterygium wilfordii HOM05D001945 ORTHO05D002048 5.6e-07 57.8 88 37.5
Aa31sc103G10 Aethionema arabicum HOM05D001945 ORTHO05D002048 7.3e-07 57.4 88 38.6
Cc00_g09710 Coffea canephora HOM05D002915 ORTHO05D003004 7.3e-07 57.4 82 39.0
TWI09G1418 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 7.3e-07 57.4 93 32.3
Actinidia09651 Actinidia chinensis HOM05D001945 ORTHO05D002048 9.5e-07 57.0 93 35.5
C02p22950 Brassica napus HOM05D001945 ORTHO05D002048 9.5e-07 57.0 83 37.3
ClCG08G017150 Citrullus lanatus HOM05D001945 ORTHO05D002048 9.5e-07 57.0 88 37.5
Nn1g09544 Nelumbo nucifera HOM05D002915 ORTHO05D003004 9.5e-07 57.0 83 38.6
Sopen05g010760 Solanum pennellii HOM05D001945 ORTHO05D002048 9.5e-07 57.0 88 36.4
vmacro16134 Vaccinium macrocarpon HOM05D002915 ORTHO05D003004 9.5e-07 57.0 83 37.3
BcaB03g15205 Brassica carinata HOM05D001945 ORTHO05D002048 1.2e-06 56.6 87 36.8
BcaB05g24270 Brassica carinata HOM05D001945 ORTHO05D002048 1.2e-06 56.6 87 35.6
Ca_16459_v3 Cicer arietinum L. HOM05D001945 ORTHO05D002048 1.2e-06 56.6 87 36.8
MELO3C010742.2 Cucumis melo HOM05D001945 ORTHO05D002048 1.2e-06 56.6 88 37.5
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 1.2e-06 56.6 83 37.3
PGSC0003DMG400029105 Solanum tuberosum HOM05D001945 ORTHO05D002048 1.2e-06 56.6 88 36.4
Actinidia20710 Actinidia chinensis HOM05D001945 ORTHO05D002048 1.6e-06 56.2 93 35.5
A02p14170 Brassica napus HOM05D001945 ORTHO05D002048 1.6e-06 56.2 87 37.9
BraA02t06480Z Brassica rapa HOM05D001945 ORTHO05D002048 1.6e-06 56.2 87 37.9
Cc03_g08730 Coffea canephora HOM05D002915 ORTHO05D003004 1.6e-06 56.2 82 37.8
Eucgr.H04638 Eucalyptus grandis HOM05D001945 ORTHO05D002048 1.6e-06 56.2 87 36.8
MBI11_g23475_MAGBIO Magnolia biondii HOM05D001945 ORTHO05D002048 1.6e-06 56.2 86 39.5
PSO017G2290 Papaver somniferum HOM05D001945 ORTHO05D002048 1.6e-06 56.2 94 36.2
PSO478G2749 Papaver somniferum HOM05D001945 ORTHO05D002048 1.6e-06 56.2 93 35.5
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 1.6e-06 56.2 85 32.9
CAN.G593.4 Capsicum annuum HOM05D001945 ORTHO05D002048 2.1e-06 55.8 91 35.2
Gohir.D12G152600 Gossypium hirsutum HOM05D001945 ORTHO05D002048 2.1e-06 55.8 88 38.6
HanXRQChr17g0569031 Helianthus annuus HOM05D001945 ORTHO05D002048 2.1e-06 55.8 94 33.0
Lalb_Chr07g0187131 Lupinus albus HOM05D001945 ORTHO05D002048 2.1e-06 55.8 88 38.6
Lalb_Chr13g0303601 Lupinus albus HOM05D002915 ORTHO05D003004 2.1e-06 55.8 84 41.7
Rhsim12G0105400 Rhododendron simsii HOM05D002915 ORTHO05D003004 2.1e-06 55.8 82 35.4
Rhsim13G0213700 Rhododendron simsii HOM05D002915 ORTHO05D003004 2.1e-06 55.8 85 37.6
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 2.1e-06 55.8 93 32.3
CARHR059880 Cardamine hirsuta HOM05D001945 ORTHO05D002048 2.8e-06 55.5 89 36.0
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 2.8e-06 55.5 90 35.6
Duzib268G1458 Durio zibethinus HOM05D001945 ORTHO05D002048 2.8e-06 55.5 87 37.9
HanXRQChr17g0540241 Helianthus annuus HOM05D001945 ORTHO05D002048 2.8e-06 55.5 88 39.8
Lj6A815T43 Lonicera japonica HOM05D002915 ORTHO05D003004 2.8e-06 55.5 82 36.6
Lj3g0011377 Lotus japonicus HOM05D002915 ORTHO05D003004 2.8e-06 55.5 69 40.6
Peaxi162Scf00128g01229 Petunia axillaris HOM05D001945 ORTHO05D002048 2.8e-06 55.5 87 35.6
Rhsim12G0025800 Rhododendron simsii HOM05D001945 ORTHO05D002048 2.8e-06 55.5 92 34.8
Sed0009544 Sechium edule HOM05D001945 ORTHO05D002048 2.8e-06 55.5 66 42.4
Solyc05g015420.4 Solanum lycopersicum HOM05D001945 ORTHO05D002048 2.8e-06 55.5 88 36.4
GSVIVG01010486001 Vitis vinifera HOM05D001945 ORTHO05D002048 2.8e-06 55.5 88 40.9
Actinidia30648 Actinidia chinensis HOM05D001945 ORTHO05D002048 3.6e-06 55.1 88 36.4
Lj6A826T55 Lonicera japonica HOM05D001945 ORTHO05D002048 3.6e-06 55.1 88 36.4
MD16G1170100 Malus domestica HOM05D002915 ORTHO05D003004 3.6e-06 55.1 96 32.3
Potri.015G096200 Populus trichocarpa HOM05D001945 ORTHO05D002048 3.6e-06 55.1 88 36.4
Hund03449 Selenicereus undatus HOM05D002915 ORTHO05D003004 3.6e-06 55.1 83 34.9
TAR374G0847 Trochodendron aralioides HOM05D002915 ORTHO05D003004 3.6e-06 55.1 90 35.6
AL2G25890 Arabidopsis lyrata HOM05D001945 ORTHO05D002048 4.7e-06 54.7 87 35.6
MSTRG.504 Avicennia marina HOM05D001945 ORTHO05D002048 4.7e-06 54.7 88 38.6
ClCG11G013670 Citrullus lanatus HOM05D001945 ORTHO05D002048 4.7e-06 54.7 88 37.5
Cc11_g03110 Coffea canephora HOM05D002915 ORTHO05D003004 4.7e-06 54.7 82 37.8
Thhalv10018922m.g Eutrema salsugineum HOM05D001945 ORTHO05D002048 4.7e-06 54.7 56 46.4
Gohir.A12G148700 Gossypium hirsutum HOM05D001945 ORTHO05D002048 4.7e-06 54.7 88 38.6
Gorai.001G059100 Gossypium raimondii HOM05D001945 ORTHO05D002048 4.7e-06 54.7 88 36.4
Gorai.008G165100 Gossypium raimondii HOM05D001945 ORTHO05D002048 4.7e-06 54.7 88 38.6
HanXRQChr06g0174921 Helianthus annuus HOM05D001945 ORTHO05D002048 4.7e-06 54.7 92 37.0
Lj5g0020165 Lotus japonicus HOM05D002915 ORTHO05D003004 4.7e-06 54.7 81 37.0
Medtr3g085330 Medicago truncatula HOM05D001945 ORTHO05D002048 4.7e-06 54.7 87 35.6
Nitab4.5_0009043g0010 Nicotiana tabacum HOM05D001945 ORTHO05D002048 4.7e-06 54.7 87 35.6
Psat7g076920 Pisum sativum HOM05D001945 ORTHO05D002048 4.7e-06 54.7 87 36.8
Rhsim02G0221300 Rhododendron simsii HOM05D002915 ORTHO05D003004 4.7e-06 54.7 85 36.5
Thecc.02G208700 Theobroma cacao HOM05D001945 ORTHO05D002048 4.7e-06 54.7 93 36.6
TPR.G17097 Trifolium pratense HOM05D001945 ORTHO05D002048 4.7e-06 54.7 87 36.8
vmacro16106 Vaccinium macrocarpon HOM05D001945 ORTHO05D002048 4.7e-06 54.7 87 33.3
Cfa009370 Carpinus fangiana HOM05D001945 ORTHO05D002048 6.2e-06 54.3 88 38.6
Haze_07137 Corylus avellana HOM05D001945 ORTHO05D002048 6.2e-06 54.3 87 34.5
ECA234G1125 Erigeron canadensis HOM05D001945 ORTHO05D002048 6.2e-06 54.3 87 33.3
Gohir.D07G055700 Gossypium hirsutum HOM05D001945 ORTHO05D002048 6.2e-06 54.3 88 36.4
Lj6g0013707 Lotus japonicus HOM05D002915 ORTHO05D003004 6.2e-06 54.3 70 38.6
Psat5g095600 Pisum sativum HOM05D001945 ORTHO05D002048 6.2e-06 54.3 87 34.5
Atru.chr11.2324 Acer truncatum HOM05D001945 ORTHO05D002048 8.1e-06 53.9 88 36.4
Actinidia36805 Actinidia chinensis HOM05D001945 ORTHO05D002048 8.1e-06 53.9 95 35.8
MSTRG.8003 Avicennia marina HOM05D001945 ORTHO05D002048 8.1e-06 53.9 88 37.5
Carub.0002s1363 Capsella rubella HOM05D001945 ORTHO05D002048 8.1e-06 53.9 87 34.5
Ciclev10031699m.g Citrus clementina HOM05D001945 ORTHO05D002048 8.1e-06 53.9 88 37.5
Cc11_g16900 Coffea canephora HOM05D001945 ORTHO05D002048 8.1e-06 53.9 88 36.4
COL.COLO4_20402 Corchorus olitorius HOM05D001945 ORTHO05D002048 8.1e-06 53.9 88 38.6
Haze_12419 Corylus avellana HOM05D001945 ORTHO05D002048 8.1e-06 53.9 88 38.6
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 8.1e-06 53.9 93 33.3
Lalb_Chr12g0206181 Lupinus albus HOM05D001945 ORTHO05D002048 8.1e-06 53.9 87 35.6
Psat5g051600 Pisum sativum HOM05D001945 ORTHO05D002048 8.1e-06 53.9 94 38.3
SEGI_00973 Sequoiadendron giganteum HOM05D001945 ORTHO05D002048 8.1e-06 53.9 91 36.3


User provided reference genes

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