Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 2.3e-51 205.3 103 100.0
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 9.5e-26 120.2 113 60.2
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.4e-15 85.1 113 44.2
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.3e-14 83.2 113 42.5
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.2e-14 82.4 113 40.7
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.9e-14 82.0 118 43.2
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 4.9e-14 81.3 113 41.6
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 6.4e-14 80.9 114 43.0
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 2.4e-13 79.0 112 42.0
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 3.2e-13 78.6 113 41.6
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.4e-13 77.8 114 42.1
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.1e-13 77.4 110 41.8
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 7.1e-13 77.4 112 41.1
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 9.3e-13 77.0 118 43.2
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.1e-12 75.9 113 42.5
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.7e-12 75.5 115 41.7
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 4.6e-12 74.7 113 38.9
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 6.0e-12 74.3 115 41.7
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.0e-12 74.3 115 41.7
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 6.0e-12 74.3 113 39.8
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 6.0e-12 74.3 93 45.2
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 6.0e-12 74.3 93 45.2
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 1.0e-11 73.6 114 40.4
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 1.7e-11 72.8 113 41.6
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.3e-11 72.4 113 38.1
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.3e-11 72.4 109 40.4
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 3.0e-11 72.0 113 39.8
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 5.1e-11 71.2 115 41.7
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 6.6e-11 70.9 113 38.1
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 8.7e-11 70.5 92 45.7
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 8.7e-11 70.5 113 38.9
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.5e-10 69.7 113 37.2
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 1.9e-10 69.3 117 39.3
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.5e-10 68.9 93 43.0
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.5e-10 68.9 93 43.0
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 2.5e-10 68.9 93 43.0
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.5e-10 68.9 93 41.9
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 2.5e-10 68.9 104 39.4
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 3.3e-10 68.6 93 40.9
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 3.3e-10 68.6 114 37.7
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 4.3e-10 68.2 118 39.0
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 4.3e-10 68.2 106 38.7
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 5.6e-10 67.8 93 41.9
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 5.6e-10 67.8 93 41.9
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 5.6e-10 67.8 99 40.4
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 7.3e-10 67.4 93 40.9
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 7.3e-10 67.4 93 41.9
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.6e-10 67.0 81 45.7
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.3e-09 66.6 93 40.9
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.3e-09 66.6 82 45.1
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 1.3e-09 66.6 93 39.8
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.3e-09 66.6 118 34.7
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.3e-09 66.6 93 40.9
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.6e-09 66.2 93 40.9
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 1.6e-09 66.2 93 39.8
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.6e-09 66.2 93 39.8
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.6e-09 66.2 113 34.5
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 1.6e-09 66.2 113 38.1
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.6e-09 66.2 73 53.4
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.6e-09 66.2 93 40.9
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.6e-09 66.2 105 41.9
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.6e-09 66.2 122 34.4
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.6e-09 66.2 93 43.0
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.1e-09 65.9 114 38.6
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.1e-09 65.9 114 37.7
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.8e-09 65.5 93 39.8
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 2.8e-09 65.5 93 39.8
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.8e-09 65.5 92 41.3
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 2.8e-09 65.5 93 38.7
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 2.8e-09 65.5 93 40.9
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 2.8e-09 65.5 93 40.9
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 3.6e-09 65.1 93 39.8
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 3.6e-09 65.1 92 41.3
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.8e-09 64.7 78 46.2
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 4.8e-09 64.7 92 39.1
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 4.8e-09 64.7 92 39.1
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 4.8e-09 64.7 93 39.8
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 6.2e-09 64.3 109 34.9
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 6.2e-09 64.3 93 39.8
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.2e-09 64.3 78 46.2
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 6.2e-09 64.3 93 43.0
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 8.1e-09 63.9 92 41.3
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 8.1e-09 63.9 105 41.9
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 8.1e-09 63.9 92 39.1
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 8.1e-09 63.9 93 37.6
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.1e-08 63.5 96 42.7
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-08 63.5 84 42.9
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.4e-08 63.2 93 38.7
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-08 63.2 81 42.0
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-08 63.2 78 46.2
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-08 63.2 78 44.9
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.8e-08 62.8 107 43.0
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 2.4e-08 62.4 105 41.0
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 4.0e-08 61.6 93 40.9
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 5.3e-08 61.2 94 40.4
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 5.3e-08 61.2 94 40.4
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.2e-07 60.1 93 38.7
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 1.2e-07 60.1 93 39.8
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 1.2e-07 60.1 100 38.0
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 1.5e-07 59.7 94 39.4
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 2.0e-07 59.3 106 36.8
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 2.0e-07 59.3 81 45.7
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.0e-07 59.3 100 37.0
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 2.6e-07 58.9 100 39.0
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.4e-07 58.5 93 37.6
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 3.4e-07 58.5 74 44.6
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 3.4e-07 58.5 99 37.4
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 3.4e-07 58.5 99 37.4
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 5.8e-07 57.8 99 37.4
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.6e-07 57.4 99 37.4
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 9.9e-07 57.0 100 36.0
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 9.9e-07 57.0 93 37.6
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 1.3e-06 56.6 99 35.4
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.3e-06 56.6 92 37.0
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 1.3e-06 56.6 91 38.5
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 1.7e-06 56.2 99 35.4
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.7e-06 56.2 100 36.0
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.7e-06 56.2 115 33.0
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 2.9e-06 55.5 99 35.4
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 2.9e-06 55.5 93 37.6
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 3.8e-06 55.1 93 35.5
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 8.4e-06 53.9 93 36.6


User provided reference genes

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