Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.2e-109 399.8 201 100.0
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 6.1e-85 317.8 198 79.8
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 3.2e-78 295.4 198 76.3
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 3.2e-78 295.4 198 73.2
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 4.2e-78 295.0 198 75.8
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 4.2e-78 295.0 200 74.5
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 7.2e-78 294.3 198 75.3
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 7.2e-78 294.3 198 76.3
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 1.2e-77 293.5 200 73.5
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 6.1e-77 291.2 198 74.7
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 6.1e-77 291.2 198 74.2
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.0e-76 290.4 198 73.7
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 4.0e-76 288.5 198 72.7
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 4.0e-76 288.5 200 71.5
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 6.7e-76 287.7 198 76.3
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 8.8e-76 287.3 198 73.7
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 8.8e-76 287.3 198 74.2
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.5e-75 286.6 198 73.2
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.5e-75 286.6 198 73.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.6e-75 285.8 198 73.7
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-75 285.8 198 73.7
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 3.3e-75 285.4 198 71.7
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 4.4e-75 285.0 198 71.7
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 4.4e-75 285.0 198 73.7
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 5.7e-75 284.6 198 74.2
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 5.7e-75 284.6 198 74.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 7.5e-75 284.3 198 72.7
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 9.7e-75 283.9 198 71.7
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 9.7e-75 283.9 198 73.7
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 9.7e-75 283.9 200 68.5
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.7e-74 283.1 198 70.7
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.2e-74 282.7 198 73.7
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.8e-74 281.6 198 72.7
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 6.3e-74 281.2 198 70.7
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 6.3e-74 281.2 198 71.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 8.2e-74 280.8 198 70.2
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.1e-73 280.4 198 71.2
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.4e-73 280.0 201 68.2
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.4e-73 280.0 198 72.2
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.4e-73 280.0 198 72.7
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.8e-73 279.6 197 69.5
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 2.4e-73 279.3 198 70.7
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 4.1e-73 278.5 198 72.2
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 5.3e-73 278.1 198 69.7
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 5.3e-73 278.1 189 74.6
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.0e-73 277.7 198 71.7
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 7.0e-73 277.7 198 70.7
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 7.0e-73 277.7 198 71.2
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 2.0e-72 276.2 198 71.7
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 2.0e-72 276.2 198 70.2
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.7e-72 275.8 198 70.7
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.7e-72 275.8 198 69.2
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.7e-72 275.8 198 69.7
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 4.5e-72 275.0 198 71.7
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 7.7e-72 274.2 198 69.2
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.0e-71 273.9 198 70.2
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.0e-71 273.9 198 69.7
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 2.9e-71 272.3 198 70.2
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.8e-71 271.9 198 68.2
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.0e-71 271.6 198 70.7
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 8.5e-71 270.8 197 69.0
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 8.5e-71 270.8 197 69.0
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 8.5e-71 270.8 195 65.1
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.5e-70 270.0 198 67.7
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.5e-70 270.0 198 67.7
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-70 270.0 198 69.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 67.7
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.9e-70 269.6 208 66.3
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 67.7
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 67.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 67.7
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 2.5e-70 269.2 198 67.7
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 2.5e-70 269.2 197 68.5
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 4.2e-70 268.5 197 68.5
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.2e-70 267.7 199 70.4
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.2e-69 266.9 198 68.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.2e-69 266.9 198 68.2
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 2.1e-69 266.2 198 66.2
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.7e-69 265.8 191 71.2
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 3.6e-69 265.4 198 68.2
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 3.6e-69 265.4 198 65.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 3.6e-69 265.4 198 67.7
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 4.7e-69 265.0 198 69.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 6.1e-69 264.6 204 68.1
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 8.0e-69 264.2 201 66.2
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.0e-68 263.8 198 68.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.8e-68 263.1 198 65.7
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.8e-68 263.1 198 66.2
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.8e-68 263.1 201 66.2
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 3.0e-68 262.3 199 68.3
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.4e-67 258.8 193 67.9
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.4e-67 258.8 185 65.9
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 4.4e-67 258.5 190 67.9
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.7e-66 255.4 182 68.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 6.3e-66 254.6 191 67.5
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 6.3e-66 254.6 198 68.2
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.1e-65 253.8 182 68.1
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.8e-65 253.1 195 65.6
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 2.4e-65 252.7 198 67.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 7.0e-65 251.1 198 65.2
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 9.1e-65 250.8 191 65.4
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.6e-64 250.0 198 63.6
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 2.3e-63 246.1 175 70.9
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-62 243.0 200 64.5
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 4.2e-62 241.9 184 67.9
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 4.2e-62 241.9 173 68.8
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 4.2e-62 241.9 178 69.1
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.5e-62 241.5 201 61.7
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 7.2e-62 241.1 198 64.6
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 3.6e-61 238.8 328 46.0
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.0e-60 237.3 200 63.5
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.0e-60 235.7 198 62.6
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 6.8e-60 234.6 198 62.6
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.0e-59 233.0 174 69.0
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 2.4e-57 226.1 198 58.1
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.4e-57 226.1 235 55.7
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.2e-56 223.8 186 64.5
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.8e-55 218.8 217 55.3
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.3e-54 215.3 195 56.4
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.6e-54 214.9 233 54.9
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.2e-53 213.8 195 54.4
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.4e-51 205.7 251 49.8
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.4e-49 200.3 168 63.1
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 9.2e-49 197.6 217 52.1
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 1.5e-46 190.3 195 51.8
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.6e-45 186.8 191 52.4
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 7.5e-43 177.9 128 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 7.0e-41 171.4 173 52.6
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.2e-40 170.6 226 47.3
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 3.0e-39 166.0 112 75.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 9.5e-38 161.0 112 71.4
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.6e-37 159.1 166 50.6
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-35 153.7 115 65.2
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.4e-33 147.1 116 67.2
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.6e-32 143.7 210 39.5
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 6.0e-32 141.7 87 77.0
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 6.0e-32 141.7 112 63.4
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.3e-30 136.0 89 70.8
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-28 129.8 87 70.1
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.4e-27 125.9 81 77.8
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.6e-27 124.8 81 76.5
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 2.2e-26 123.2 206 37.4
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-25 120.9 103 60.2
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 9.2e-25 117.9 85 67.1
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.3e-23 113.2 123 50.4
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 6.9e-20 101.7 79 70.9
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 9.9e-19 97.8 98 56.1
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.8e-18 95.9 192 32.3
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-17 93.2 77 59.7
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.4e-17 92.0 69 66.7
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.1e-17 91.7 68 64.7
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.2e-16 90.9 129 42.6
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 7.3e-14 81.6 74 52.7
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.3e-13 80.9 105 46.7
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.8e-13 79.7 70 54.3
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 3.6e-13 79.3 192 29.2
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.8e-13 79.0 45 82.2
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 5.3e-12 75.5 75 52.0
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.0e-12 74.7 109 44.0
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.6e-11 73.2 49 65.3
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 3.2e-09 66.2 47 61.7


User provided reference genes

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