Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 3.1e-187 658.3 329 100.0
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.8e-87 325.5 315 53.7
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.1e-86 324.3 268 60.4
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 5.8e-85 318.5 276 58.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.3e-84 317.4 322 54.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.7e-84 317.0 276 58.3
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.7e-84 317.0 272 58.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.9e-84 316.2 267 59.9
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.1e-83 314.3 314 53.8
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.5e-83 313.2 296 54.4
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.2e-83 312.8 260 59.2
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 3.2e-83 312.8 261 59.4
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 7.1e-83 311.6 260 59.6
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 9.3e-83 311.2 259 60.2
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.2e-82 310.8 262 56.1
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.6e-82 310.5 276 57.2
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 6.0e-82 308.5 291 56.4
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.3e-81 307.4 261 58.6
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 3.9e-81 305.8 296 53.4
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 3.9e-81 305.8 261 57.9
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 8.7e-81 304.7 270 56.3
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.5e-80 303.9 295 52.2
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.5e-80 303.9 263 58.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 3.3e-80 302.8 261 58.6
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 5.7e-80 302.0 299 52.8
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 7.4e-80 301.6 272 55.5
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 9.7e-80 301.2 292 52.7
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.3e-79 300.8 260 54.6
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.6e-79 300.4 278 54.0
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.8e-79 299.7 260 57.3
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 4.8e-79 298.9 261 57.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 6.3e-79 298.5 315 50.2
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 6.3e-79 298.5 263 56.3
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.1e-78 297.7 262 53.4
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.4e-78 297.4 263 59.7
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.8e-78 297.0 260 57.7
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.4e-78 296.6 260 56.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.4e-78 296.6 262 56.1
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.4e-78 296.6 255 55.3
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.1e-78 296.2 260 57.3
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.1e-78 296.2 283 54.1
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.1e-78 296.2 223 62.8
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 5.3e-78 295.4 261 57.9
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 6.9e-78 295.0 265 54.0
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 2.0e-77 293.5 262 55.0
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.6e-77 293.1 255 55.3
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.6e-77 293.1 272 55.1
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.5e-77 292.4 272 52.2
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.5e-77 292.4 297 51.5
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 5.9e-77 292.0 273 52.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 7.6e-77 291.6 280 53.2
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.3e-76 290.8 260 56.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.7e-76 290.4 295 52.9
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.7e-76 290.4 264 55.7
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.9e-76 289.7 266 55.6
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.8e-76 289.3 261 52.9
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 6.5e-76 288.5 262 55.0
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 2.5e-75 286.6 257 56.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 3.2e-75 286.2 261 54.4
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.5e-75 285.4 259 53.3
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.7e-74 283.1 261 52.1
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.7e-74 283.1 246 54.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.6e-74 282.7 255 52.9
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.6e-74 282.7 292 49.3
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 4.6e-74 282.3 283 51.2
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.6e-74 282.3 310 49.7
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.9e-74 281.6 223 61.0
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.0e-73 281.2 223 61.4
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.4e-73 280.8 252 56.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.8e-73 280.4 220 57.7
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.3e-73 280.0 223 58.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.9e-73 279.3 269 53.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 6.7e-73 278.5 227 56.8
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.5e-72 276.6 289 50.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 3.3e-72 276.2 289 50.9
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.3e-72 276.2 340 45.6
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.7e-71 273.9 220 58.2
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.8e-71 273.1 297 49.8
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.8e-71 273.1 340 45.3
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.1e-70 271.2 262 51.1
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.4e-70 270.0 295 49.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.1e-70 269.2 270 50.7
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 5.3e-70 268.9 316 47.5
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.2e-69 267.7 343 43.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.0e-69 266.9 293 48.1
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.0e-69 266.9 281 50.9
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 6.5e-68 261.9 299 46.2
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 2.5e-67 260.0 272 51.1
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.2e-67 258.5 296 47.6
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 9.4e-67 258.1 288 48.6
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.2e-66 257.7 260 51.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-66 257.7 272 50.4
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.7e-66 256.5 262 49.6
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 7.9e-66 255.0 288 47.2
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-65 254.2 267 50.6
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.4e-65 254.2 263 50.2
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 6.7e-65 251.9 262 48.9
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-64 250.8 268 50.4
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.5e-64 250.8 270 49.3
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.0e-64 250.4 264 50.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.6e-64 250.0 306 47.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 5.7e-64 248.8 317 45.1
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.7e-64 248.1 272 48.5
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-63 246.9 264 48.9
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-63 246.9 264 48.9
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.2e-63 246.9 264 48.9
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.2e-63 246.9 222 55.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.8e-63 245.7 263 48.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.8e-63 245.7 263 48.3
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.3e-63 245.4 263 50.2
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 6.3e-63 245.4 264 48.5
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 8.2e-63 245.0 263 48.3
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.2e-63 245.0 306 45.8
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.2e-63 245.0 284 47.9
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 7.0e-62 241.9 264 48.9
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 7.0e-62 241.9 221 55.2
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 6.5e-60 235.3 259 48.6
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.4e-59 231.5 263 46.4
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-57 228.0 234 48.7
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 9.7e-56 221.5 236 50.4
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-55 220.7 226 49.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.2e-55 218.4 202 56.4
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.6e-53 214.2 192 55.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.3e-52 211.1 192 55.7
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 8.5e-52 208.4 174 57.5
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 5.5e-51 205.7 218 48.6
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.0e-49 201.4 206 50.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-49 200.7 206 50.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 3.0e-49 199.9 206 50.5
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.0e-49 199.9 250 44.8
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.8e-49 198.4 215 47.4
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-48 197.6 206 50.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.5e-48 197.6 206 50.5
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.7e-48 195.7 210 49.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 7.5e-48 195.3 266 40.6
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.7e-47 193.0 202 51.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.1e-46 189.9 216 47.2
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.2e-42 177.9 291 39.9
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.1e-42 177.2 205 45.9
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 6.1e-42 175.6 248 42.3
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.0e-41 173.3 157 54.8
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.8e-39 166.8 137 62.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.0e-37 160.6 143 56.6
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.5e-37 159.5 240 42.1
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.0e-36 158.3 118 63.6
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 3.8e-36 156.4 196 44.4
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-34 151.0 135 57.0
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 6.1e-34 149.1 271 33.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 8.0e-34 148.7 170 45.9
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 8.3e-31 138.7 131 55.0
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.8e-30 137.5 120 57.5
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.8e-30 137.5 158 48.7
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.1e-30 136.7 235 37.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.6e-29 134.4 197 41.1
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.5e-29 132.9 120 55.0
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.5e-27 127.9 136 47.1
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.3e-27 126.7 173 42.2
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 5.6e-27 125.9 251 33.9
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 8.0e-26 122.1 132 47.7
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.4e-22 110.5 83 61.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 9.2e-22 108.6 172 37.2
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.9e-20 103.2 76 61.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.1e-17 95.1 88 50.0
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.2e-13 81.6 84 46.4
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 7.8e-13 79.0 175 36.0
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.7e-12 77.8 96 43.8
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.9e-12 76.6 86 50.0
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.8e-10 70.5 181 30.4
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.6e-10 70.1 172 33.1
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 2.3e-09 67.4 74 50.0
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 5.2e-09 66.2 166 33.7
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.0e-08 64.3 58 50.0


User provided reference genes

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