Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G077 Amborella trichopoda HOM05D002988 ORTHO05D003479 2.8e-70 268.5 133 100.0
ATR0559G075 Amborella trichopoda HOM05D002988 ORTHO05D003479 2.4e-13 79.3 102 52.9
SalBow1G6715 Salvia bowleyana HOM05D002988 ORTHO05D003479 2.0e-07 59.7 45 71.1
HPP92_019444 Vanilla planifolia HOM05D002988 ORTHO05D003479 2.0e-07 59.7 45 71.1
MSTRG.11903 Avicennia marina HOM05D002988 ORTHO05D003479 4.4e-07 58.5 45 68.9
Zm00001eb124450 Zea mays HOM05D002988 ORTHO05D003479 4.4e-07 58.5 45 68.9
Zm00001eb335850 Zea mays HOM05D002988 ORTHO05D003479 4.4e-07 58.5 45 68.9
Aqoxy2G02232 Aquilegia oxysepala HOM05D002988 ORTHO05D003479 7.5e-07 57.8 45 68.9
CSS0006732 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
CANSAT21G0553 Cannabis sativa HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
CiPaw.11G099100 Carya illinoinensis HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
Ciclev10000803m.g Citrus clementina HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
MD06G1038400 Malus domestica HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
MD16G1270500 Malus domestica HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
Nn2g11139 Nelumbo nucifera HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
Nitab4.5_0001632g0050 Nicotiana tabacum HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
Oeu017089.1 Olea europaea HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
Os01g0147200 Oryza sativa ssp. japonica HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
Prupe.5G026700 Prunus persica HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
PGR042G1591 Punica granatum HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
SGA_v2.0_scaffold89G27433 Striga asiatica HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
SGA_v2.0_scaffold96G29042 Striga asiatica HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
GSVIVG01011111001 Vitis vinifera HOM05D002988 ORTHO05D003479 9.8e-07 57.4 45 66.7
Dinv29011 Davidia involucrata HOM05D002988 ORTHO05D003479 1.3e-06 57.0 45 64.4
Lj8C320T14 Lonicera japonica HOM05D002988 ORTHO05D003479 1.3e-06 57.0 66 48.5
A09p34060 Brassica napus HOM05D002988 ORTHO05D003479 1.7e-06 56.6 45 64.4
RcHm_v2.0_Chr7g0212171 Rosa chinensis HOM05D002988 ORTHO05D003479 1.7e-06 56.6 45 64.4
Atru.chr6.1538 Acer truncatum HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Ah.01g012950 Amaranthus hybridus HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
MSTRG.13895 Avicennia marina HOM05D002988 ORTHO05D003479 2.2e-06 56.2 47 63.8
EL10Ac9g22922 Beta vulgaris HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Cfa012530 Carpinus fangiana HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Cfa012531 Carpinus fangiana HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
CDE02G4409 Ceratophyllum demersum HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Dinv25275 Davidia involucrata HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Hma1.2p1_1645F.1_g295370 Hydrangea macrophylla HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Lj2C229T12 Lonicera japonica HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Manes.15G170300 Manihot esculenta HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Peaxi162Scf00185g01120 Petunia axillaris HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Potri.001G135900 Populus trichocarpa HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Potri.003G097700 Populus trichocarpa HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
QL12p001089 Quercus lobata HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
Sabra01G0105100 Salix brachista HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 64.4
SalBow8G3553 Salvia bowleyana HOM05D002988 ORTHO05D003479 2.2e-06 56.2 45 66.7
AUR62015204 Chenopodium quinoa HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 66.7
AUR62017667 Chenopodium quinoa HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 66.7
FvH4_5g23250 Fragaria vesca HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 64.4
FAN04G0340 Fragaria x ananassa HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 64.4
FAN13G1166 Fragaria x ananassa HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 64.4
FAN18G1509 Fragaria x ananassa HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 64.4
FAN18G3031 Fragaria x ananassa HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 64.4
Gohir.A03G000029 Gossypium hirsutum HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 66.7
Gohir.D03G176600 Gossypium hirsutum HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 66.7
Gorai.003G185800 Gossypium raimondii HOM05D002988 ORTHO05D003479 2.9e-06 55.8 45 66.7
Sed0002043 Sechium edule HOM05D002988 ORTHO05D003479 2.9e-06 55.8 56 57.1
Sed0019870 Sechium edule HOM05D002988 ORTHO05D003479 2.9e-06 55.8 56 57.1
Sc06g0007870 Simmondsia chinensis HOM05D002988 ORTHO05D003479 2.9e-06 55.8 56 57.1
Cc08_g03550 Coffea canephora HOM05D002988 ORTHO05D003479 3.7e-06 55.5 47 61.7
ECA246G1645 Erigeron canadensis HOM05D002988 ORTHO05D003479 3.7e-06 55.5 45 62.2
Solyc06g066320.3 Solanum lycopersicum HOM05D002988 ORTHO05D003479 3.7e-06 55.5 45 64.4
Sopen06g021700 Solanum pennellii HOM05D002988 ORTHO05D003479 3.7e-06 55.5 45 64.4
PGSC0003DMG400016781 Solanum tuberosum HOM05D002988 ORTHO05D003479 3.7e-06 55.5 45 64.4
THA.LOC104812762 Tarenaya hassleriana HOM05D002988 ORTHO05D003479 3.7e-06 55.5 45 62.2
TWI60G0749 Tripterygium wilfordii HOM05D002988 ORTHO05D003479 3.7e-06 55.5 45 64.4
TWI81G0561 Tripterygium wilfordii HOM05D002988 ORTHO05D003479 3.7e-06 55.5 45 64.4
BcaC05g27239 Brassica carinata HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
BcaC05g27241 Brassica carinata HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
C05p31540 Brassica napus HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
BolC5t31878H Brassica oleracea HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
BraA09t38952Z Brassica rapa HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
Cpa.g.sc16.1 Carica papaya HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
CiPaw.12G069000 Carya illinoinensis HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 64.4
HanXRQChr06g0172711 Helianthus annuus HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
Lsat_1_v5_gn_3_20800 Lactuca sativa HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
Lsat_1_v5_gn_3_88780 Lactuca sativa HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
MBI05_g28380_MAGBIO Magnolia biondii HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 62.2
PSO063G5812 Papaver somniferum HOM05D002988 ORTHO05D003479 4.9e-06 55.1 45 66.7
Actinidia01328 Actinidia chinensis HOM05D002988 ORTHO05D003479 6.4e-06 54.7 46 67.4
arahy.Tifrunner.gnm1.ann1.7QF3KQ Arachis hypogaea HOM05D002988 ORTHO05D003479 6.4e-06 54.7 46 63.0
CAN.G474.23 Capsicum annuum HOM05D002988 ORTHO05D003479 6.4e-06 54.7 45 64.4
Duzib205G0674 Durio zibethinus HOM05D002988 ORTHO05D003479 6.4e-06 54.7 45 64.4
Gohir.D12G208000 Gossypium hirsutum HOM05D002988 ORTHO05D003479 6.4e-06 54.7 45 64.4
Gorai.008G223500 Gossypium raimondii HOM05D002988 ORTHO05D003479 6.4e-06 54.7 45 64.4
Thecc.03G311200 Theobroma cacao HOM05D002988 ORTHO05D003479 6.4e-06 54.7 45 64.4
TAR623G1658 Trochodendron aralioides HOM05D002988 ORTHO05D003479 6.4e-06 54.7 45 62.2
ClCG09G011590 Citrullus lanatus HOM05D002988 ORTHO05D003479 8.3e-06 54.3 56 55.4
MELO3C003444.2 Cucumis melo HOM05D002988 ORTHO05D003479 8.3e-06 54.3 56 55.4
CsaV3_3G048800 Cucumis sativus L. HOM05D002988 ORTHO05D003479 8.3e-06 54.3 56 55.4
Glyma.01G012500 Glycine max HOM05D002988 ORTHO05D003479 8.3e-06 54.3 67 53.7
Rhsim11G0032300 Rhododendron simsii HOM05D002988 ORTHO05D003479 8.3e-06 54.3 56 55.4
TAR369G1079 Trochodendron aralioides HOM05D002988 ORTHO05D003479 8.3e-06 54.3 45 60.0


User provided reference genes

Program Settings