Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 4.7e-199 698.0 438 100.0
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.9e-93 345.5 446 61.0
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-91 341.3 445 56.2
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-91 341.3 449 56.6
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.7e-90 335.9 446 60.3
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 6.1e-90 335.5 452 56.9
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.8e-89 334.0 464 53.7
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 5.2e-89 332.4 452 56.9
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.5e-88 330.9 462 59.5
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.0e-88 330.5 452 58.8
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 7.5e-88 328.6 452 58.6
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.7e-87 327.4 452 56.2
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.2e-87 327.0 463 53.6
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 8.3e-87 325.1 464 54.3
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 8.3e-87 325.1 447 54.1
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 5.4e-86 322.4 458 55.7
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 5.4e-86 322.4 463 49.2
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.2e-85 321.2 466 59.2
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.0e-85 320.5 469 54.4
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.7e-85 320.1 447 55.7
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 6.0e-85 318.9 444 59.5
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.0e-84 318.2 450 54.7
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 2.3e-84 317.0 461 51.4
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 6.6e-84 315.5 451 55.7
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.6e-84 315.1 446 58.7
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.6e-84 315.1 446 58.7
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.9e-83 313.9 460 54.3
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 3.3e-83 313.2 449 43.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.8e-82 310.1 466 48.9
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 4.7e-82 309.3 462 52.2
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.1e-81 308.1 464 49.6
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-81 308.1 453 56.1
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.4e-81 307.8 471 49.0
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 4.0e-81 306.2 449 51.4
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 6.8e-81 305.4 476 46.0
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 1.5e-80 304.3 467 45.8
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 2.6e-80 303.5 465 53.5
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 3.4e-80 303.1 453 51.2
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.4e-80 302.8 466 53.4
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.3e-79 301.2 459 52.5
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.7e-79 300.8 473 47.6
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.7e-79 300.8 473 47.6
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 4.1e-78 296.2 465 53.5
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 7.1e-78 295.4 460 52.4
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 9.2e-78 295.0 443 46.0
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 9.2e-78 295.0 451 53.2
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.7e-76 290.8 454 52.4
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.0e-76 290.0 483 47.4
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.5e-75 287.0 463 48.6
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 9.5e-75 285.0 455 51.9
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 2.1e-74 283.9 444 53.2
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.8e-74 283.5 434 43.3
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.6e-74 283.1 437 49.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 3.1e-73 280.0 471 46.9
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-72 278.1 465 52.0
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.2e-72 278.1 443 46.3
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 4.4e-72 276.2 438 45.4
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 5.8e-72 275.8 442 50.7
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 9.9e-72 275.0 449 51.2
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.7e-71 274.2 413 53.0
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 4.9e-71 272.7 459 49.9
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 8.3e-71 271.9 458 50.4
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 8.3e-71 271.9 458 50.0
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 4.1e-70 269.6 452 49.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.5e-67 260.4 450 50.0
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 2.1e-66 257.3 435 37.5
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.4e-65 254.6 442 49.5
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 6.8e-65 252.3 431 42.0
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.5e-64 251.1 435 46.4
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.3e-63 248.1 442 50.9
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 7.3e-59 232.3 440 36.6
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.4e-57 228.0 427 48.9
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.2e-55 220.7 453 51.2
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.9e-54 217.6 413 45.3
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 5.6e-51 206.1 435 41.1
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.1e-49 200.3 467 37.9
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 5.8e-48 196.1 393 47.3
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 9.9e-48 195.3 446 39.7
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.3e-47 194.9 450 43.1
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 2.4e-46 190.7 153 58.8
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-45 187.2 134 62.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-45 187.2 134 62.7
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.2e-42 176.0 378 51.9
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 2.6e-40 170.6 132 56.8
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.6e-40 170.6 163 50.9
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.4e-40 170.2 139 56.8
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.5e-40 169.9 137 55.5
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.5e-40 169.9 161 53.4
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 4.5e-40 169.9 452 35.8
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 4.5e-40 169.9 142 55.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.8e-40 169.5 137 55.5
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 5.8e-40 169.5 137 55.5
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 5.8e-40 169.5 159 52.2
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.0e-39 168.7 155 54.8
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.0e-39 168.7 144 54.2
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.7e-39 167.9 147 53.7
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.7e-39 167.9 141 56.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.7e-39 167.9 422 34.8
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.8e-39 166.8 150 52.0
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.8e-39 166.8 234 43.6
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 3.8e-39 166.8 148 52.7
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 4.9e-39 166.4 155 52.3
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 4.9e-39 166.4 137 54.7
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 4.9e-39 166.4 148 52.7
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 6.5e-39 166.0 153 52.3
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 6.5e-39 166.0 156 51.9
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 6.5e-39 166.0 155 51.0
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 8.4e-39 165.6 428 35.5
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-38 165.2 160 53.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.1e-38 165.2 154 50.0
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.4e-38 164.9 162 51.9
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.9e-38 164.5 120 59.2
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.9e-38 164.5 122 58.2
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.9e-38 164.5 150 51.3
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.9e-38 164.5 252 44.0
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.5e-38 164.1 147 52.4
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 3.2e-38 163.7 155 52.9
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.2e-38 163.7 167 49.1
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.2e-38 163.7 412 33.0
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 4.2e-38 163.3 159 49.7
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 4.2e-38 163.3 159 49.7
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 4.2e-38 163.3 131 54.2
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 5.5e-38 162.9 147 53.1
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 7.1e-38 162.5 122 57.4
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 7.1e-38 162.5 148 52.0
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 7.1e-38 162.5 412 32.5
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 7.1e-38 162.5 138 54.3
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 9.3e-38 162.2 122 57.4
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.2e-37 161.8 447 38.0
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.6e-37 161.4 122 57.4
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.1e-37 161.0 432 34.7
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 2.1e-37 161.0 146 52.1
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.7e-37 160.6 144 54.9
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.5e-37 160.2 122 58.2
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.5e-37 160.2 145 53.1
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.5e-37 160.2 132 56.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.0e-37 159.5 434 35.3
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 7.9e-37 159.1 122 59.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 7.9e-37 159.1 127 54.3
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 1.0e-36 158.7 429 38.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.3e-36 158.3 432 43.5
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.8e-36 157.9 122 55.7
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.8e-36 157.9 122 55.7
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 2.3e-36 157.5 122 57.4
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 3.9e-36 156.8 434 38.0
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 6.7e-36 156.0 430 32.1
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 8.7e-36 155.6 149 54.4
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-35 155.2 423 32.9
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.1e-35 155.2 122 53.3
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.9e-35 154.5 138 52.9
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.3e-35 153.3 253 39.5
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 5.7e-35 152.9 127 53.5
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.6e-34 151.4 129 52.7
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 3.4e-24 117.1 240 31.7
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 3.4e-24 117.1 240 31.7
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 5.1e-20 103.2 78 64.1
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 6.3e-18 96.3 369 43.6
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 5.7e-11 73.2 54 61.1
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.8e-10 70.9 83 49.4
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.1e-09 67.0 82 48.8
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 1.2e-08 65.5 77 44.2
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 7.7e-08 62.8 51 56.9
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 1.3e-07 62.0 51 56.9


User provided reference genes

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