Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G235 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.4e-68 262.7 125 100.0
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 5.3e-47 191.0 103 89.3
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 3.7e-40 168.3 103 76.7
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 9.5e-20 100.5 98 54.1
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 6.8e-18 94.4 92 47.8
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.5e-17 93.2 98 49.0
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 2.0e-17 92.8 87 50.6
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 2.6e-17 92.4 92 45.7
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 4.4e-17 91.7 94 48.9
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 4.4e-17 91.7 94 48.9
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 5.8e-17 91.3 87 51.7
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 9.8e-17 90.5 89 49.4
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.3e-16 90.1 85 49.4
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.3e-16 90.1 87 50.6
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.7e-16 89.7 99 43.4
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.7e-16 89.7 89 49.4
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.7e-16 89.7 87 48.3
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.7e-16 89.7 90 50.0
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 2.2e-16 89.4 87 49.4
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 2.2e-16 89.4 91 46.2
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 2.2e-16 89.4 91 47.3
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 2.9e-16 89.0 92 47.8
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.7e-16 88.6 91 46.2
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.7e-16 88.6 91 46.2
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 3.7e-16 88.6 91 46.2
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.9e-16 88.2 92 47.8
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.9e-16 88.2 93 48.4
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 4.9e-16 88.2 93 48.4
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 4.9e-16 88.2 80 52.5
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 6.4e-16 87.8 105 43.8
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 8.3e-16 87.4 86 51.2
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 8.3e-16 87.4 91 47.3
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 8.3e-16 87.4 90 48.9
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 1.1e-15 87.0 94 46.8
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 1.1e-15 87.0 94 46.8
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 1.1e-15 87.0 92 48.9
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 1.9e-15 86.3 94 45.7
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 1.9e-15 86.3 93 47.3
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 2.4e-15 85.9 87 47.1
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 3.2e-15 85.5 91 47.3
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 3.2e-15 85.5 91 47.3
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.1e-15 85.1 80 52.5
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 4.1e-15 85.1 93 46.2
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 4.1e-15 85.1 80 51.2
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 4.1e-15 85.1 100 46.0
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 5.4e-15 84.7 77 54.5
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 5.4e-15 84.7 87 47.1
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 7.0e-15 84.3 91 46.2
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 9.2e-15 84.0 104 40.4
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 1.2e-14 83.6 96 43.8
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-14 83.6 86 46.5
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 1.2e-14 83.6 77 50.6
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 1.6e-14 83.2 94 43.6
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.6e-14 83.2 91 48.4
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.6e-14 83.2 80 51.2
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.6e-14 83.2 80 52.5
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 2.1e-14 82.8 77 54.5
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 2.1e-14 82.8 86 51.2
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-14 82.4 94 44.7
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.7e-14 82.4 72 51.4
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 2.7e-14 82.4 95 46.3
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 2.7e-14 82.4 80 51.2
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.7e-14 82.4 104 43.3
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.7e-14 82.4 87 47.1
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 3.5e-14 82.0 87 47.1
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 3.5e-14 82.0 94 44.7
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.5e-14 82.0 94 44.7
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 3.5e-14 82.0 90 47.8
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 4.6e-14 81.6 95 48.4
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.6e-14 81.6 94 44.7
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 7.8e-14 80.9 95 48.4
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 7.8e-14 80.9 75 52.0
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 7.8e-14 80.9 92 42.4
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.0e-13 80.5 77 53.2
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 1.0e-13 80.5 93 48.4
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.0e-13 80.5 94 44.7
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.0e-13 80.5 100 44.0
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.0e-13 80.5 89 47.2
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.3e-13 80.1 77 53.2
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 1.3e-13 80.1 77 50.6
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 1.3e-13 80.1 77 50.6
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.3e-13 80.1 91 46.2
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.3e-13 80.1 76 50.0
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.3e-13 80.1 92 43.5
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 2.3e-13 79.3 77 54.5
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.3e-13 79.3 97 42.3
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 2.3e-13 79.3 75 49.3
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 2.3e-13 79.3 87 44.8
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.3e-13 79.3 92 44.6
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 2.3e-13 79.3 74 50.0
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 3.0e-13 79.0 77 51.9
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 3.0e-13 79.0 77 51.9
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 3.0e-13 79.0 95 42.1
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 3.0e-13 79.0 91 48.4
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 3.0e-13 79.0 90 44.4
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 3.0e-13 79.0 83 45.8
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 3.9e-13 78.6 76 50.0
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 3.9e-13 78.6 91 40.7
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 5.1e-13 78.2 117 37.6
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 5.1e-13 78.2 80 48.8
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-13 78.2 72 51.4
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 6.6e-13 77.8 84 45.2
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 6.6e-13 77.8 87 43.7
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 6.6e-13 77.8 76 51.3
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 6.6e-13 77.8 76 50.0
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 6.6e-13 77.8 91 40.7
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 8.6e-13 77.4 77 51.9
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 8.6e-13 77.4 77 51.9
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 8.6e-13 77.4 78 47.4
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 8.6e-13 77.4 77 49.4
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 8.6e-13 77.4 92 43.5
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 8.6e-13 77.4 100 43.0
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 1.1e-12 77.0 77 50.6
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.9e-12 76.3 77 51.9
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.9e-12 76.3 76 50.0
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 1.9e-12 76.3 87 43.7
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.9e-12 76.3 87 47.1
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.9e-12 76.3 87 47.1
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.5e-12 75.9 76 50.0
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 2.5e-12 75.9 87 43.7
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.3e-12 75.5 96 43.8
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.3e-12 75.5 86 45.3
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 4.3e-12 75.1 77 50.6
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 4.3e-12 75.1 77 49.4
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 5.6e-12 74.7 86 46.5
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.6e-12 74.7 76 47.4
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 7.3e-12 74.3 76 48.7
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 9.5e-12 73.9 75 49.3
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.6e-11 73.2 98 39.8
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 2.8e-11 72.4 85 41.2
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 2.8e-11 72.4 111 37.8
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 3.6e-11 72.0 75 45.3
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.2e-11 71.2 113 37.2
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 8.1e-11 70.9 113 37.2
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 8.1e-11 70.9 113 38.1
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.1e-11 70.9 85 43.5
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 8.1e-11 70.9 90 43.3
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 1.1e-10 70.5 118 36.4
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.4e-10 70.1 85 42.4
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.4e-10 70.1 75 48.0
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-10 70.1 101 38.6
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 3.1e-10 68.9 70 47.1
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.9e-10 67.4 87 41.4
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.9e-10 67.4 87 40.2
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.6e-09 65.9 92 37.0
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 4.4e-09 65.1 93 41.9
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 5.8e-09 64.7 103 35.9
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 5.8e-09 64.7 92 40.2
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 9.9e-09 63.9 87 39.1
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 9.9e-09 63.9 87 39.1
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-08 63.5 92 37.0
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 6.4e-08 61.2 60 46.7
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.4e-07 60.1 49 57.1
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 2.4e-07 59.3 87 39.1
Aqoxy1G03157 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 3.2e-07 58.9 71 42.3
Aqoxy1G03342 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 3.2e-07 58.9 71 42.3
Aqoxy2G00205 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 7.1e-07 57.8 71 42.3
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.1e-06 56.2 99 33.3


User provided reference genes

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