Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G214 Amborella trichopoda HOM05D003325 ORTHO05D003852 4.8e-105 384.4 183 100.0
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 6.0e-39 164.9 114 68.4
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 9.0e-19 97.8 118 44.9
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.2e-18 97.4 118 44.9
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 5.8e-18 95.1 120 44.2
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 1.7e-17 93.6 115 44.3
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 1.7e-17 93.6 118 44.9
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.2e-17 93.2 148 37.2
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 8.4e-17 91.3 120 42.5
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 1.9e-16 90.1 115 45.2
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 1.9e-16 90.1 145 36.6
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 2.5e-16 89.7 115 41.7
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 5.5e-16 88.6 148 36.5
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.2e-15 87.4 115 42.6
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.2e-15 87.4 118 39.0
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 1.6e-15 87.0 108 45.4
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.1e-15 86.7 116 41.4
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 2.1e-15 86.7 118 38.1
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 2.7e-15 86.3 107 43.9
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 2.7e-15 86.3 148 35.8
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 2.7e-15 86.3 115 40.0
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.7e-15 86.3 141 35.5
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 3.5e-15 85.9 107 43.9
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 6.0e-15 85.1 118 37.3
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.9e-15 84.7 119 42.0
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.9e-15 84.7 119 42.9
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 7.9e-15 84.7 115 42.6
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.0e-14 84.3 115 41.7
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.3e-14 84.0 117 41.0
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.3e-14 84.0 145 35.9
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 1.3e-14 84.0 123 39.8
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 1.8e-14 83.6 115 46.1
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.8e-14 83.6 118 40.7
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.8e-14 83.6 118 41.5
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 3.0e-14 82.8 136 36.0
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.0e-14 82.8 146 34.2
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.0e-14 82.8 146 34.2
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 3.0e-14 82.8 114 41.2
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 3.9e-14 82.4 117 39.3
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 3.9e-14 82.4 122 43.4
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.9e-14 82.4 118 37.3
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.1e-14 82.0 113 42.5
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 5.1e-14 82.0 119 41.2
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 6.7e-14 81.6 107 41.1
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 6.7e-14 81.6 116 40.5
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 8.7e-14 81.3 113 41.6
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 8.7e-14 81.3 107 43.9
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 1.1e-13 80.9 115 38.3
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 1.1e-13 80.9 115 38.3
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 1.1e-13 80.9 115 38.3
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-13 80.9 115 38.3
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 1.5e-13 80.5 121 38.8
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.9e-13 80.1 115 40.9
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.5e-13 79.7 135 34.8
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 2.5e-13 79.7 108 42.6
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 2.5e-13 79.7 111 40.5
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 2.5e-13 79.7 111 41.4
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 3.3e-13 79.3 115 38.3
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 3.3e-13 79.3 115 38.3
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 3.3e-13 79.3 116 44.0
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.3e-13 79.3 109 43.1
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 3.3e-13 79.3 150 34.0
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 5.7e-13 78.6 108 41.7
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 5.7e-13 78.6 128 38.3
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.7e-13 78.6 118 40.7
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 7.4e-13 78.2 119 38.7
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 7.4e-13 78.2 110 44.5
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 9.7e-13 77.8 113 41.6
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 9.7e-13 77.8 113 41.6
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 9.7e-13 77.8 117 37.6
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 9.7e-13 77.8 107 41.1
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 9.7e-13 77.8 112 35.7
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.3e-12 77.4 107 42.1
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.3e-12 77.4 115 40.0
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.3e-12 77.4 115 40.0
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.3e-12 77.4 115 40.0
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 1.6e-12 77.0 115 38.3
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 1.6e-12 77.0 107 43.0
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 1.6e-12 77.0 107 43.0
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 2.2e-12 76.6 111 38.7
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 2.2e-12 76.6 107 43.0
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.2e-12 76.6 108 38.9
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 2.8e-12 76.3 121 35.5
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 6.3e-12 75.1 111 36.9
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 6.3e-12 75.1 119 38.7
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.2e-12 74.7 115 36.5
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 8.2e-12 74.7 124 37.9
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.4e-11 73.9 119 37.8
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 1.4e-11 73.9 118 35.6
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.8e-11 73.6 118 36.4
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 2.4e-11 73.2 112 39.3
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 2.4e-11 73.2 108 40.7
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-11 72.8 115 39.1
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 3.1e-11 72.8 113 39.8
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 4.1e-11 72.4 124 37.1
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 4.1e-11 72.4 109 37.6
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 5.3e-11 72.0 115 36.5
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 5.3e-11 72.0 108 40.7
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 5.3e-11 72.0 116 33.6
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 1.2e-10 70.9 108 39.8
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 2.6e-10 69.7 109 39.4
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 3.4e-10 69.3 115 36.5
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 3.4e-10 69.3 115 36.5
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 3.4e-10 69.3 121 38.0
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 4.5e-10 68.9 108 38.9
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 5.9e-10 68.6 115 34.8
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.7e-09 67.0 115 33.0
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.7e-09 67.0 120 35.0
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 2.2e-09 66.6 110 36.4
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.9e-09 66.2 118 33.9
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.9e-09 66.2 108 35.2
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 3.8e-09 65.9 118 33.9
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 5.0e-09 65.5 125 36.0
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 5.0e-09 65.5 105 36.2
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-08 63.5 125 34.4
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 1.9e-08 63.5 108 32.4
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 2.5e-08 63.2 128 33.6
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 2.5e-08 63.2 114 33.3
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 3.2e-08 62.8 121 36.4
Sabra15G0119600 Salix brachista HOM05D003325 ORTHO05D003852 1.6e-07 60.5 115 33.0
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.6e-07 60.5 114 33.3
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 1.6e-07 60.5 114 33.3
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.1e-07 60.1 106 30.2
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.7e-07 59.7 117 31.6
MD06G1139000 Malus domestica HOM05D003325 ORTHO05D003852 4.6e-07 58.9 104 32.7
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 3.0e-06 56.2 102 38.2
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 5.1e-06 55.5 104 30.8


User provided reference genes

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