Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 4.0e-145 518.1 265 100.0
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.4e-68 263.8 228 63.6
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 6.4e-66 255.0 229 61.6
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.1e-62 244.2 202 67.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 3.3e-62 242.7 226 59.7
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.2e-59 234.2 224 57.1
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 3.4e-59 232.6 220 57.3
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 7.6e-59 231.5 188 64.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.3e-58 230.7 231 60.2
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 3.2e-57 226.1 223 59.6
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.2e-57 226.1 224 57.1
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 9.2e-57 224.6 227 54.6
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.2e-56 224.2 199 62.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-56 223.8 228 53.9
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.7e-56 223.0 248 51.2
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 3.5e-56 222.6 222 57.2
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 3.5e-56 222.6 227 55.1
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 7.8e-56 221.5 224 56.2
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.3e-55 220.7 233 54.5
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.7e-55 220.3 209 57.4
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.7e-55 220.3 194 64.4
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 3.0e-55 219.5 224 54.0
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.1e-55 218.8 222 55.4
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 5.1e-55 218.8 227 57.3
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.6e-55 218.4 222 55.0
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.5e-54 217.2 206 58.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.5e-54 217.2 229 54.1
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.9e-54 216.9 207 59.9
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.5e-54 216.5 238 56.3
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 7.3e-54 214.9 227 54.2
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.3e-54 214.9 204 59.3
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.3e-54 214.9 204 59.3
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.3e-53 214.2 221 53.4
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.6e-53 213.8 205 58.5
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 2.8e-53 213.0 229 52.8
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.8e-53 213.0 201 58.2
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.8e-53 212.2 204 59.3
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.1e-52 211.1 201 58.2
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.4e-52 210.7 203 58.6
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.8e-52 210.3 234 51.3
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.8e-52 210.3 226 53.1
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.4e-52 209.9 228 54.4
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.4e-52 209.9 229 55.5
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.1e-52 209.5 222 55.4
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 4.0e-52 209.1 215 56.7
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 4.0e-52 209.1 202 58.9
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 4.0e-52 209.1 202 58.9
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 5.3e-52 208.8 230 53.5
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.3e-52 208.8 229 57.2
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.9e-52 208.4 227 52.9
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 9.0e-52 208.0 196 58.7
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.2e-51 207.6 222 54.5
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.2e-51 207.6 227 52.9
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.2e-51 207.6 189 59.8
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.0e-51 206.8 243 50.2
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 2.0e-51 206.8 174 64.4
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.0e-51 206.8 228 53.1
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.4e-51 205.7 228 52.6
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.4e-51 205.7 194 58.2
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 5.8e-51 205.3 232 54.3
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 5.8e-51 205.3 193 58.5
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.6e-51 204.9 194 58.2
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 9.9e-51 204.5 196 58.7
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 9.9e-51 204.5 225 53.8
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.7e-50 203.8 242 49.2
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 2.9e-50 203.0 205 55.6
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 2.9e-50 203.0 197 59.9
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.8e-50 202.6 227 52.0
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.8e-50 202.6 150 73.3
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.4e-50 201.4 194 56.7
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 8.4e-50 201.4 203 58.1
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.4e-49 200.7 270 46.3
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.4e-49 200.7 228 56.1
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.4e-49 200.7 201 54.2
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.9e-49 200.3 157 66.2
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.9e-49 200.3 206 56.3
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.4e-49 199.9 200 58.0
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 4.2e-49 199.1 226 49.1
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.1e-49 198.4 194 60.8
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.1e-49 198.4 194 58.8
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 9.3e-49 198.0 200 58.0
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-48 197.6 201 55.7
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.5e-48 196.1 203 55.7
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.6e-48 195.7 208 55.8
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 4.6e-48 195.7 207 53.6
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 6.0e-48 195.3 211 54.0
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 6.0e-48 195.3 135 70.4
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.0e-47 194.5 205 57.6
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.0e-47 194.5 219 54.8
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.7e-47 193.7 206 57.3
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 3.0e-47 193.0 184 57.6
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.9e-47 192.6 162 64.2
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 5.1e-47 192.2 231 51.5
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.9e-46 190.3 214 56.1
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.5e-46 189.9 199 56.8
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 2.5e-46 189.9 228 52.6
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 7.3e-46 188.3 207 55.6
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.3e-46 188.3 304 41.8
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.3e-45 187.6 201 52.7
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.3e-45 187.6 224 52.2
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.6e-45 187.2 230 51.7
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 3.6e-45 186.0 199 52.8
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.1e-44 184.5 228 50.0
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.8e-44 183.7 199 53.8
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 5.8e-43 178.7 226 50.9
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.7e-42 177.2 199 50.8
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 6.4e-42 175.3 190 57.4
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 8.4e-42 174.9 207 52.2
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 2.4e-41 173.3 159 60.4
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.2e-41 172.9 196 53.1
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.2e-41 172.9 206 51.5
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.2e-41 172.9 161 59.0
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.2e-41 172.9 194 52.6
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.1e-41 171.8 159 60.4
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 7.1e-41 171.8 213 50.2
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 9.3e-41 171.4 233 48.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 9.3e-41 171.4 159 59.7
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.6e-40 170.6 235 45.5
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.6e-40 170.6 217 50.2
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.1e-40 170.2 208 51.4
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 2.7e-40 169.9 214 51.4
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 6.0e-40 168.7 227 46.3
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 6.0e-40 168.7 276 42.8
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 6.0e-40 168.7 216 49.1
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 7.9e-40 168.3 193 52.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.3e-39 167.5 196 52.6
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 5.1e-39 165.6 210 50.5
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 8.7e-39 164.9 216 49.1
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 8.7e-39 164.9 194 53.1
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.1e-38 164.5 244 45.9
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.1e-38 164.5 205 50.7
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.1e-38 164.5 136 64.7
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.5e-38 164.1 98 75.5
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.9e-38 163.7 207 49.3
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 4.3e-38 162.5 244 44.7
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.3e-38 162.5 204 49.5
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 5.6e-38 162.2 210 50.0
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 5.6e-38 162.2 222 46.4
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.3e-37 161.0 210 49.5
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.8e-37 159.8 124 62.1
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 4.8e-37 159.1 210 47.6
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 4.0e-36 156.0 123 67.5
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 5.3e-36 155.6 135 57.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.0e-35 153.7 231 43.7
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.6e-35 153.3 145 60.7
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.7e-34 150.6 182 46.2
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 2.2e-34 150.2 215 45.6
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.1e-33 147.9 214 44.4
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.4e-33 147.5 106 68.9
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 2.5e-33 146.7 195 49.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.0e-31 141.4 90 72.2
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 2.1e-29 133.7 85 72.9
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 2.1e-29 133.7 85 72.9
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 6.9e-28 128.6 155 51.6
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-27 127.9 81 72.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.4e-27 126.3 148 49.3
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.2e-25 119.4 187 43.3
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 8.2e-21 105.1 102 55.9
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.1e-20 104.8 165 44.2
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 9.0e-20 101.7 81 71.6
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.2e-16 91.3 85 48.2
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 6.1e-16 89.0 76 56.6
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-13 80.9 229 35.4
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.0e-10 71.6 99 46.5
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 3.2e-09 66.6 40 72.5
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 5.5e-09 65.9 43 67.4
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.9e-08 62.0 126 32.5


User provided reference genes

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