Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 9.8e-83 310.1 155 100.0
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.7e-63 246.1 136 89.7
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 6.2e-21 104.8 141 48.9
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.6e-16 90.1 134 43.3
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 4.6e-16 88.6 131 43.5
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.3e-15 87.0 142 43.7
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.3e-15 87.0 138 44.2
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.3e-15 87.0 138 44.2
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.8e-15 86.7 135 45.2
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 5.1e-15 85.1 116 44.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 8.7e-15 84.3 138 42.0
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.9e-14 83.2 136 42.6
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.9e-14 83.2 136 42.6
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.9e-14 83.2 125 47.2
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.5e-14 82.8 133 42.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.5e-14 82.8 129 45.0
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 3.3e-14 82.4 126 41.3
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 4.3e-14 82.0 126 41.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.4e-14 81.3 138 39.1
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 9.7e-14 80.9 136 41.9
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.6e-13 80.1 133 43.6
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.6e-13 80.1 117 42.7
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 2.8e-13 79.3 113 45.1
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 3.7e-13 79.0 114 40.4
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.8e-13 78.6 115 42.6
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 6.3e-13 78.2 120 43.3
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 8.2e-13 77.8 118 41.5
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 8.2e-13 77.8 125 39.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.1e-12 77.4 134 41.8
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.1e-12 77.4 128 39.1
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.1e-12 77.4 114 36.8
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-12 77.0 120 40.8
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-12 77.0 120 40.8
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.4e-12 77.0 125 36.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.4e-12 76.3 124 40.3
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.1e-12 75.9 132 41.7
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 3.1e-12 75.9 116 40.5
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.1e-12 75.9 130 36.9
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 4.1e-12 75.5 142 34.5
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 4.1e-12 75.5 130 37.7
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.1e-12 75.5 161 39.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 5.3e-12 75.1 128 36.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 6.9e-12 74.7 133 40.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 6.9e-12 74.7 131 39.7
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 6.9e-12 74.7 118 40.7
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 9.0e-12 74.3 118 39.8
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 9.0e-12 74.3 115 41.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.2e-11 73.9 116 41.4
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.0e-11 73.2 137 33.6
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.0e-11 73.2 113 41.6
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.0e-11 73.2 129 38.8
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.6e-11 72.8 117 41.9
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.6e-11 72.8 115 40.0
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.6e-11 72.8 128 39.8
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 3.4e-11 72.4 133 40.6
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 3.4e-11 72.4 129 39.5
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 3.4e-11 72.4 118 41.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 3.4e-11 72.4 134 39.6
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 4.5e-11 72.0 138 37.0
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 7.7e-11 71.2 127 38.6
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 7.7e-11 71.2 126 38.9
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 7.7e-11 71.2 135 37.8
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.7e-11 71.2 118 39.0
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.0e-10 70.9 115 42.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.3e-10 70.5 127 40.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.3e-10 70.5 130 40.0
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.2e-10 69.7 132 37.9
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.2e-10 69.7 117 41.0
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.9e-10 69.3 127 37.8
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.9e-10 69.3 127 39.4
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.9e-10 69.3 145 36.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.9e-10 69.3 129 38.8
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.8e-10 68.9 127 36.2
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 3.8e-10 68.9 122 41.0
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 3.8e-10 68.9 138 40.6
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 5.0e-10 68.6 125 40.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 5.0e-10 68.6 128 35.9
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.5e-10 68.2 117 40.2
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 8.5e-10 67.8 127 37.0
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.1e-09 67.4 146 30.8
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-09 67.4 114 38.6
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-09 67.4 117 40.2
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.1e-09 67.4 124 35.5
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.1e-09 67.4 126 34.9
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.4e-09 67.0 120 33.3
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 1.9e-09 66.6 120 38.3
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.5e-09 66.2 140 35.7
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.5e-09 66.2 114 35.1
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 3.2e-09 65.9 127 33.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 4.2e-09 65.5 115 37.4
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 5.5e-09 65.1 130 35.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 7.2e-09 64.7 127 33.9
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 7.2e-09 64.7 125 35.2
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 7.2e-09 64.7 134 34.3
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 9.4e-09 64.3 139 33.8
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 9.4e-09 64.3 134 35.1
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.2e-08 63.9 141 34.8
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.6e-08 63.5 118 33.1
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 2.1e-08 63.2 114 37.7
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.7e-08 62.8 125 34.4
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 3.6e-08 62.4 125 38.4
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.6e-08 62.0 126 34.1
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 4.6e-08 62.0 119 37.8
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 7.9e-08 61.2 127 33.9
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.9e-08 61.2 124 34.7
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.4e-07 60.5 124 33.1
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.4e-07 60.5 124 33.1
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.4e-07 60.5 124 33.1
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-07 60.5 123 36.6
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.8e-07 60.1 125 37.6
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 2.3e-07 59.7 177 32.2
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 6.7e-07 58.2 119 34.5
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 8.8e-07 57.8 126 33.3
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-06 57.4 109 38.5
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.5e-06 56.2 132 33.3
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 3.3e-06 55.8 127 32.3
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.3e-06 55.8 109 38.5
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.3e-06 55.8 127 33.1
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 4.3e-06 55.5 125 31.2
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.3e-06 55.5 109 37.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.3e-06 55.5 109 36.7
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.3e-06 55.5 127 33.1
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 4.3e-06 55.5 127 33.1
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.7e-06 55.1 121 32.2
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 9.7e-06 54.3 109 35.8
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 9.7e-06 54.3 52 48.1


User provided reference genes

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