Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 9.6e-112 406.8 194 100.0
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.1e-83 313.5 185 75.7
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 5.5e-83 311.2 185 76.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 4.7e-82 308.1 185 74.6
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 1.4e-81 306.6 185 74.1
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 1.8e-81 306.2 185 73.0
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 2.3e-81 305.8 184 71.2
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 3.0e-81 305.4 184 74.5
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 1.5e-80 303.1 185 72.4
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.0e-80 302.8 185 73.0
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 4.4e-80 301.6 185 71.9
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 5.7e-80 301.2 185 73.0
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 5.7e-80 301.2 184 71.7
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 7.4e-80 300.8 184 72.8
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 9.7e-80 300.4 184 72.8
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 9.7e-80 300.4 185 71.9
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 3.7e-79 298.5 184 71.2
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.8e-78 296.2 184 71.2
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.8e-78 296.2 184 71.2
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.8e-78 296.2 184 72.3
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 1.8e-78 296.2 186 71.5
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 4.1e-78 295.0 184 70.1
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 5.3e-78 294.7 184 70.1
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 9.1e-78 293.9 184 70.1
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 1.2e-77 293.5 184 70.1
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 1.2e-77 293.5 184 71.2
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 2.6e-77 292.4 184 68.5
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 2.6e-77 292.4 185 69.2
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 3.5e-77 292.0 184 68.5
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 1.7e-76 289.7 185 69.7
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 2.2e-76 289.3 214 63.6
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 2.9e-76 288.9 185 69.7
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 3.8e-76 288.5 185 70.8
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 6.5e-76 287.7 195 67.7
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 8.5e-76 287.3 184 72.3
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.9e-75 286.2 190 67.4
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 1.9e-75 286.2 187 69.0
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 4.2e-75 285.0 184 67.4
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 4.2e-75 285.0 185 69.2
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 4.2e-75 285.0 185 70.3
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 5.5e-75 284.6 184 67.4
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 5.5e-75 284.6 184 67.4
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 9.4e-75 283.9 184 67.9
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.1e-74 282.7 185 70.3
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 2.7e-74 282.3 177 70.6
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 8.0e-74 280.8 184 69.0
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 8.0e-74 280.8 184 66.8
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 1.0e-73 280.4 184 66.8
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.0e-73 280.4 184 66.3
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.4e-73 280.0 184 68.5
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 1.4e-73 280.0 185 68.6
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 1.4e-73 280.0 189 67.7
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.8e-73 279.6 184 65.2
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 2.3e-73 279.3 184 67.4
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 2.3e-73 279.3 198 65.7
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 3.0e-73 278.9 184 66.3
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 4.0e-73 278.5 184 65.8
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 4.0e-73 278.5 191 65.4
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 6.7e-73 277.7 186 67.2
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 8.8e-73 277.3 184 66.8
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.1e-72 276.9 186 66.1
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.1e-72 276.9 184 66.3
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 1.5e-72 276.6 199 64.8
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 2.0e-72 276.2 184 66.3
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 2.0e-72 276.2 186 66.7
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 2.6e-72 275.8 184 67.9
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 3.3e-72 275.4 184 66.3
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 3.3e-72 275.4 184 65.2
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 3.3e-72 275.4 184 65.2
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 4.4e-72 275.0 185 68.6
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 5.7e-72 274.6 186 66.7
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 9.7e-72 273.9 174 70.7
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.3e-71 273.5 184 65.8
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 2.2e-71 272.7 185 65.4
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 3.7e-71 271.9 211 61.1
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 6.3e-71 271.2 184 64.7
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.4e-70 270.0 185 63.8
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 5.3e-70 268.1 185 63.8
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.2e-69 266.9 186 64.5
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 2.7e-69 265.8 184 65.2
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 4.5e-69 265.0 184 63.0
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 7.7e-69 264.2 185 63.8
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 2.9e-68 262.3 216 56.5
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 8.8e-57 224.2 184 55.4
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.6e-56 222.6 157 64.3
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 5.7e-56 221.5 168 61.9
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 3.7e-55 218.8 185 58.4
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 3.7e-55 218.8 157 63.7
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 2.7e-53 212.6 186 50.0
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 1.5e-51 206.8 217 47.9
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 2.8e-50 202.6 149 62.4
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 5.2e-49 198.4 185 49.2
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 4.4e-48 195.3 125 70.4
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 1.7e-47 193.4 147 61.2
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 2.4e-46 189.5 119 69.7
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.9e-41 171.0 168 50.6
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 9.8e-40 167.5 184 46.7
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.3e-39 167.2 184 40.2
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 7.5e-32 141.4 145 46.2
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.9e-31 138.7 91 70.3
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.9e-31 138.7 91 70.3
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.4e-30 137.1 91 69.2
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 2.4e-30 136.3 131 52.7
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 6.0e-29 131.7 185 36.8
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.8e-29 131.3 91 67.0
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 6.6e-28 128.3 91 64.8
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.3e-23 114.0 75 68.0
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 6.4e-23 111.7 66 72.7
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 2.3e-20 103.2 84 58.3
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.4e-14 83.2 54 66.7
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.2e-14 82.4 54 64.8
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 2.3e-12 76.6 130 30.8
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 2.3e-12 76.6 40 72.5
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 6.6e-12 75.1 74 41.9
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 3.3e-11 72.8 92 45.7
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.3e-11 72.8 58 65.5
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 3.4e-08 62.8 47 53.2
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.4e-06 57.4 65 43.1


User provided reference genes

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