Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 0.0e+00 1528.8 806 100.0
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 5.5e-278 961.1 735 68.7
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 2.7e-277 958.7 736 68.1
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 6.1e-277 957.6 732 67.2
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.0e-276 956.8 735 67.5
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 3.9e-276 954.9 736 67.7
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 2.0e-275 952.6 735 68.4
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 1.3e-274 949.9 721 68.2
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.4e-270 936.4 735 66.5
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.1e-269 932.6 721 66.4
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 2.7e-269 932.2 723 66.9
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 4.7e-269 931.4 733 65.9
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.8e-268 929.5 734 63.9
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 6.7e-268 927.5 738 64.9
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 9.7e-267 923.7 741 65.5
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 2.8e-266 922.2 753 63.2
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 2.8e-266 922.2 723 66.0
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 4.8e-266 921.4 754 64.3
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 6.3e-266 921.0 726 66.1
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 3.1e-265 918.7 735 65.2
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.2e-264 916.8 726 65.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 1.2e-264 916.8 725 65.7
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.6e-264 915.6 723 65.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.6e-264 915.6 734 64.4
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 4.5e-264 914.8 726 65.0
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 7.7e-264 914.1 731 65.3
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.5e-262 909.1 722 65.4
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 1.2e-261 906.7 723 64.6
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.2e-261 906.7 734 64.0
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.6e-261 906.4 725 65.0
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 3.6e-261 905.2 734 64.2
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 6.1e-261 904.4 738 63.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 1.0e-260 903.7 735 64.1
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.8e-260 902.9 703 66.7
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 2.0e-259 899.4 734 63.9
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.6e-259 899.0 734 63.5
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 3.4e-259 898.7 757 63.5
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.7e-259 897.9 740 63.9
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 7.5e-259 897.5 747 63.3
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.3e-258 896.7 747 63.3
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.3e-258 896.7 724 64.8
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.3e-258 896.7 733 63.2
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.7e-258 896.3 734 62.7
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 2.2e-258 896.0 735 63.8
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 2.8e-258 895.6 724 64.6
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.8e-258 895.6 734 63.9
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 6.3e-258 894.4 724 64.8
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.1e-257 893.6 734 62.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.1e-257 893.6 725 63.9
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 5.3e-257 891.3 736 63.3
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.2e-256 890.2 724 64.5
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 2.7e-256 889.0 734 63.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 3.8e-255 885.2 735 62.9
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.0e-255 884.8 724 63.7
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 5.0e-255 884.8 733 64.3
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.5e-255 884.4 724 63.0
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 9.4e-254 880.6 735 62.4
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.2e-253 880.2 728 62.5
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.2e-253 880.2 747 62.4
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 4.7e-253 878.2 733 61.8
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 6.1e-253 877.9 737 62.3
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.8e-252 876.3 746 61.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.0e-252 875.5 731 62.9
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 3.0e-252 875.5 731 63.2
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.5e-251 873.2 737 61.9
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 2.0e-251 872.8 734 62.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 2.0e-251 872.8 734 62.5
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 7.5e-251 870.9 723 62.4
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 9.8e-251 870.5 734 62.7
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.3e-250 870.2 736 63.5
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.4e-249 866.7 736 61.3
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.8e-249 866.3 735 61.6
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.2e-248 863.6 734 62.8
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.0e-247 860.5 734 62.3
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.7e-247 859.8 737 60.9
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.8e-247 858.6 737 62.4
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.6e-247 857.4 759 61.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.5e-246 856.7 737 60.9
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.5e-246 856.7 737 60.9
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 5.5e-246 854.7 760 59.9
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 5.5e-246 854.7 739 60.9
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 5.5e-246 854.7 739 60.9
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 5.5e-246 854.7 724 61.7
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-245 853.6 737 61.1
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 2.8e-245 852.4 737 61.2
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 2.8e-245 852.4 737 61.2
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.7e-245 851.7 737 60.4
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-244 849.7 737 60.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.8e-244 849.7 737 60.8
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.3e-239 833.6 721 61.0
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 4.7e-237 825.1 734 59.9
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.7e-237 825.1 735 59.0
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.5e-235 820.1 720 60.6
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 5.8e-235 818.1 747 57.2
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 7.5e-235 817.8 735 59.0
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 9.8e-235 817.4 730 58.2
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.4e-233 812.8 745 59.2
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 4.3e-230 802.0 742 57.8
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.1e-228 797.3 720 59.0
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.2e-225 784.3 752 57.6
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.2e-224 783.9 638 62.4
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.5e-224 782.3 762 54.9
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.3e-223 779.6 731 56.1
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.3e-214 748.0 634 61.8
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.2e-208 730.7 732 56.3
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.1e-204 717.6 737 54.0
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.1e-204 717.6 737 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 9.9e-203 711.1 724 51.2
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 9.9e-203 711.1 731 53.1
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.7e-202 710.3 735 52.9
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 8.4e-202 708.0 754 51.7
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.4e-201 707.2 795 49.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 7.1e-201 704.9 735 52.9
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.3e-199 700.7 665 56.5
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 4.9e-194 682.2 702 53.3
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 6.7e-191 671.8 504 69.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.0e-188 662.5 726 50.4
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.7e-184 649.8 735 49.8
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 6.2e-181 638.6 544 61.8
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 7.6e-179 631.7 512 64.8
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.9e-178 629.8 504 64.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.8e-167 594.0 529 58.8
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.0e-162 578.2 617 50.7
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 2.8e-141 506.9 718 43.6
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.1e-140 505.0 386 67.6
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.1e-132 478.4 408 62.5
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.0e-110 404.4 711 35.0
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.1e-108 398.7 372 55.6
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 7.8e-99 365.9 487 46.0
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 3.0e-82 310.8 823 31.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 7.9e-75 286.2 740 28.4
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.3e-69 268.9 227 63.9
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.5e-60 236.9 189 63.5
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.1e-55 221.1 506 36.2
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.1e-47 193.0 224 49.6
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.7e-32 145.6 149 51.7
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 1.1e-31 142.9 205 42.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.6e-27 129.0 102 63.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 3.6e-27 127.9 136 51.5
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.8e-25 119.8 92 63.0
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 4.8e-24 117.5 97 60.8
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 9.1e-23 113.2 231 37.7
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.2e-21 108.6 86 64.0
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.2e-20 104.4 80 63.8
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.2e-20 104.4 83 63.9
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.2e-19 102.8 98 54.1
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.4e-18 99.4 80 61.2
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 1.3e-16 92.8 201 37.3
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.8e-16 91.7 92 54.3
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 8.3e-16 90.1 75 61.3
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 8.3e-16 90.1 111 45.9
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 5.9e-14 84.0 110 40.0
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.6e-12 77.4 67 58.2
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 3.7e-08 64.7 79 44.3
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-07 62.8 88 40.9
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.4e-07 62.0 59 54.2
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 2.7e-06 58.5 67 46.3


User provided reference genes

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