Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G082 Amborella trichopoda HOM05D000167 ORTHO05D000640 9.9e-39 162.9 79 100.0
ATR0561G035 Amborella trichopoda HOM05D000167 ORTHO05D000640 4.7e-33 144.1 79 89.9
Sabra06G0136800 Salix brachista HOM05D000167 ORTHO05D000640 5.4e-13 77.4 64 53.1
Psat7g225120 Pisum sativum HOM05D000167 ORTHO05D000640 2.7e-12 75.1 73 49.3
Medtr4g059370 Medicago truncatula HOM05D000167 ORTHO05D000640 1.0e-11 73.2 58 55.2
Nitab4.5_0000403g0080 Nicotiana tabacum HOM05D000167 ORTHO05D000640 1.3e-11 72.8 64 46.9
Potri.006G179700 Populus trichocarpa HOM05D000167 ORTHO05D000640 3.0e-11 71.6 58 48.3
Nitab4.5_0012974g0030 Nicotiana tabacum HOM05D000167 ORTHO05D000640 3.9e-11 71.2 64 45.3
PGSC0003DMG400024344 Solanum tuberosum HOM05D000167 ORTHO05D000640 8.7e-11 70.1 64 46.9
TAR362G1172 Trochodendron aralioides HOM05D000167 ORTHO05D000640 8.7e-11 70.1 74 44.6
TAR362G0317 Trochodendron aralioides HOM05D000167 ORTHO05D000640 1.5e-10 69.3 69 47.8
Ca_10417_v3 Cicer arietinum L. HOM05D000167 ORTHO05D000640 1.9e-10 68.9 67 43.3
Duzib133G0207 Durio zibethinus HOM05D000167 ORTHO05D000640 1.9e-10 68.9 67 44.8
TPR.G15551 Trifolium pratense HOM05D000167 ORTHO05D000640 3.3e-10 68.2 59 50.8
VMungo0720G2746 Vigna mungo HOM05D000167 ORTHO05D000640 3.3e-10 68.2 71 43.7
AUR62016532 Chenopodium quinoa HOM05D000167 ORTHO05D000640 7.4e-10 67.0 60 46.7
Dinv30667 Davidia involucrata HOM05D000167 ORTHO05D000640 7.4e-10 67.0 61 47.5
Manes.13G051300 Manihot esculenta HOM05D000167 ORTHO05D000640 7.4e-10 67.0 69 44.9
TPR.G13390 Trifolium pratense HOM05D000167 ORTHO05D000640 7.4e-10 67.0 61 44.3
Sc17g0002040 Simmondsia chinensis HOM05D000167 ORTHO05D000640 9.6e-10 66.6 61 47.5
CANSAT01G1863 Cannabis sativa HOM05D000167 ORTHO05D000640 1.3e-09 66.2 61 47.5
CANSAT01G2698 Cannabis sativa HOM05D000167 ORTHO05D000640 1.3e-09 66.2 61 47.5
Lsat_1_v5_gn_9_17340 Lactuca sativa HOM05D000167 ORTHO05D000640 1.6e-09 65.9 61 47.5
Psat7g220360 Pisum sativum HOM05D000167 ORTHO05D000640 1.6e-09 65.9 65 47.7
TWI36G0944 Tripterygium wilfordii HOM05D000167 ORTHO05D000640 1.6e-09 65.9 69 42.0
MSTRG.17986 Avicennia marina HOM05D000167 ORTHO05D000640 2.1e-09 65.5 64 48.4
Lj2A1122T42 Lonicera japonica HOM05D000167 ORTHO05D000640 2.1e-09 65.5 57 47.4
MBI07_g27647_MAGBIO Magnolia biondii HOM05D000167 ORTHO05D000640 2.1e-09 65.5 67 47.8
Lj2A506G45 Lonicera japonica HOM05D000167 ORTHO05D000640 3.7e-09 64.7 57 45.6
Lalb_Chr02g0150811 Lupinus albus HOM05D000167 ORTHO05D000640 3.7e-09 64.7 61 45.9
Atru.chr10.488 Acer truncatum HOM05D000167 ORTHO05D000640 4.8e-09 64.3 68 47.1
Phvul.007G135800 Phaseolus vulgaris HOM05D000167 ORTHO05D000640 4.8e-09 64.3 61 45.9
arahy.Tifrunner.gnm1.ann1.2U0JEX Arachis hypogaea HOM05D000167 ORTHO05D000640 6.2e-09 63.9 58 48.3
Glyma.20G196000 Glycine max HOM05D000167 ORTHO05D000640 6.2e-09 63.9 61 49.2
MD10G1286900 Malus domestica HOM05D000167 ORTHO05D000640 6.2e-09 63.9 77 46.8
ECA247G1327 Erigeron canadensis HOM05D000167 ORTHO05D000640 8.1e-09 63.5 63 42.9
Manes.12G093300 Manihot esculenta HOM05D000167 ORTHO05D000640 8.1e-09 63.5 56 55.4
Medtr1g090270 Medicago truncatula HOM05D000167 ORTHO05D000640 8.1e-09 63.5 61 41.0
Peaxi162Scf00487g00064 Petunia axillaris HOM05D000167 ORTHO05D000640 1.1e-08 63.2 60 45.0
Atru.chr10.2195 Acer truncatum HOM05D000167 ORTHO05D000640 1.4e-08 62.8 58 50.0
HanXRQChr03g0078221 Helianthus annuus HOM05D000167 ORTHO05D000640 1.4e-08 62.8 68 42.6
MBI05_g33719_MAGBIO Magnolia biondii HOM05D000167 ORTHO05D000640 1.4e-08 62.8 67 46.3
MBI05_g46325_MAGBIO Magnolia biondii HOM05D000167 ORTHO05D000640 1.4e-08 62.8 67 46.3
Medtr1g090280 Medicago truncatula HOM05D000167 ORTHO05D048970 1.4e-08 62.8 61 42.6
HanXRQChr10g0279621 Helianthus annuus HOM05D000167 ORTHO05D000640 1.8e-08 62.4 68 44.1
Hma1.2p1_0625F.1_g191480 Hydrangea macrophylla HOM05D000167 ORTHO05D000640 1.8e-08 62.4 56 58.9
Ciclev10004868m.g Citrus clementina HOM05D000167 ORTHO05D000640 2.4e-08 62.0 68 45.6
QL05p043558 Quercus lobata HOM05D000167 ORTHO05D000640 2.4e-08 62.0 77 45.5
TPR.G19990 Trifolium pratense HOM05D000167 ORTHO05D000640 2.4e-08 62.0 61 47.5
MELO3C027096.2 Cucumis melo HOM05D000167 ORTHO05D000640 3.1e-08 61.6 77 44.2
CsaV3_7G002840 Cucumis sativus L. HOM05D000167 ORTHO05D000640 3.1e-08 61.6 56 55.4
TWI36G0156 Tripterygium wilfordii HOM05D000167 ORTHO05D000640 3.1e-08 61.6 72 37.5
arahy.Tifrunner.gnm1.ann1.Q2DHS0 Arachis hypogaea HOM05D000167 ORTHO05D000640 4.0e-08 61.2 58 46.6
Glyma.13G289100 Glycine max HOM05D000167 ORTHO05D000640 4.0e-08 61.2 59 50.8
CSS0040567 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000640 5.3e-08 60.8 55 56.4
Gohir.D11G146700 Gossypium hirsutum HOM05D000167 ORTHO05D000640 5.3e-08 60.8 61 42.6
Gorai.007G157200 Gossypium raimondii HOM05D000167 ORTHO05D000640 5.3e-08 60.8 61 42.6
AUR62014897 Chenopodium quinoa HOM05D000167 ORTHO05D000640 6.9e-08 60.5 61 49.2
AUR62033285 Chenopodium quinoa HOM05D000167 ORTHO05D000640 6.9e-08 60.5 61 47.5
Cc01_g16510 Coffea canephora HOM05D000167 ORTHO05D000640 6.9e-08 60.5 69 40.6
Cc01_g16590 Coffea canephora HOM05D000167 ORTHO05D000640 6.9e-08 60.5 69 40.6
MELO3C018851.2 Cucumis melo HOM05D000167 ORTHO05D000640 6.9e-08 60.5 74 43.2
MD10G1287100 Malus domestica HOM05D000167 ORTHO05D000640 6.9e-08 60.5 77 45.5
Ciclev10015186m.g Citrus clementina HOM05D000167 ORTHO05D000640 9.0e-08 60.1 72 43.1
Glyma.12G212702 Glycine max HOM05D000167 ORTHO05D000640 9.0e-08 60.1 59 50.8
TPR.G19973 Trifolium pratense HOM05D000167 ORTHO05D000640 9.0e-08 60.1 61 47.5
CSS0014009 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000640 1.2e-07 59.7 72 47.2
CSS0047425 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000640 1.2e-07 59.7 55 54.5
Ciclev10017784m.g Citrus clementina HOM05D000167 ORTHO05D000640 1.2e-07 59.7 61 42.6
Gohir.A04G015600 Gossypium hirsutum HOM05D000167 ORTHO05D000640 1.2e-07 59.7 72 44.4
Gohir.D05G370700 Gossypium hirsutum HOM05D000167 ORTHO05D000640 1.2e-07 59.7 72 44.4
Gorai.009G439200 Gossypium raimondii HOM05D000167 ORTHO05D000640 1.2e-07 59.7 72 44.4
Oeu009706.1 Olea europaea HOM05D000167 ORTHO05D000640 1.2e-07 59.7 58 46.6
Oeu030270.1 Olea europaea HOM05D000167 ORTHO05D000640 1.2e-07 59.7 58 46.6
QL10p014041 Quercus lobata HOM05D000167 ORTHO05D000640 1.2e-07 59.7 77 44.2
Solyc09g059170.3 Solanum lycopersicum HOM05D000167 ORTHO05D000640 1.2e-07 59.7 64 42.2
Sopen09g022300 Solanum pennellii HOM05D000167 ORTHO05D000640 1.2e-07 59.7 64 42.2
arahy.Tifrunner.gnm1.ann1.BAHA0A Arachis hypogaea HOM05D000167 ORTHO05D000640 1.5e-07 59.3 56 50.0
Glyma.12G212600 Glycine max HOM05D000167 ORTHO05D000640 1.5e-07 59.3 59 49.2
Gohir.D06G209000 Gossypium hirsutum HOM05D000167 ORTHO05D000640 1.5e-07 59.3 72 45.8
Gorai.010G242800 Gossypium raimondii HOM05D000167 ORTHO05D000640 1.5e-07 59.3 72 45.8
Hma1.2p1_0002F.1_g002400 Hydrangea macrophylla HOM05D000167 ORTHO05D000640 1.5e-07 59.3 72 43.1
CSS0013677 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000640 2.0e-07 58.9 72 45.8
arahy.Tifrunner.gnm1.ann1.LJX15I Arachis hypogaea HOM05D000167 ORTHO05D000640 2.6e-07 58.5 56 50.0
Cfa000545 Carpinus fangiana HOM05D000167 ORTHO05D000640 2.6e-07 58.5 79 45.6
Cc01_g16600 Coffea canephora HOM05D000167 ORTHO05D000640 2.6e-07 58.5 69 40.6
CsaV3_7G003250 Cucumis sativus L. HOM05D000167 ORTHO05D000640 2.6e-07 58.5 79 41.8
PGR004G1421 Punica granatum HOM05D000167 ORTHO05D000640 2.6e-07 58.5 73 49.3
Rhsim13G0181800 Rhododendron simsii HOM05D000167 ORTHO05D000640 2.6e-07 58.5 55 56.4
CSS0040609 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000640 3.4e-07 58.2 55 52.7
AUR62031102 Chenopodium quinoa HOM05D000167 ORTHO05D000640 3.4e-07 58.2 61 47.5
Glyma.10G194000 Glycine max HOM05D000167 ORTHO05D000640 3.4e-07 58.2 61 41.0
Lj6g0009330 Lotus japonicus HOM05D000167 ORTHO05D000640 3.4e-07 58.2 72 43.1
Medtr2g083440 Medicago truncatula HOM05D000167 ORTHO05D000640 3.4e-07 58.2 61 45.9
QL08p040893 Quercus lobata HOM05D000167 ORTHO05D000640 3.4e-07 58.2 67 43.3
ClCG02G002540 Citrullus lanatus HOM05D000167 ORTHO05D000640 4.5e-07 57.8 77 41.6
ClCG02G002580 Citrullus lanatus HOM05D000167 ORTHO05D000640 4.5e-07 57.8 77 41.6
Oeu023106.1 Olea europaea HOM05D000167 ORTHO05D000640 4.5e-07 57.8 58 43.1
TPR.G20002 Trifolium pratense HOM05D000167 ORTHO05D000640 4.5e-07 57.8 61 45.9
arahy.Tifrunner.gnm1.ann1.N9GJM6 Arachis hypogaea HOM05D000167 ORTHO05D000640 5.8e-07 57.4 61 47.5
CSS0007893 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000640 5.8e-07 57.4 72 47.2
CiPaw.09G065600 Carya illinoinensis HOM05D000167 ORTHO05D000640 5.8e-07 57.4 77 40.3
ClCG00G001820 Citrullus lanatus HOM05D000167 ORTHO05D000640 5.8e-07 57.4 61 47.5
Cc02_g14190 Coffea canephora HOM05D000167 ORTHO05D000640 5.8e-07 57.4 72 44.4
Lj3g0009650 Lotus japonicus HOM05D000167 ORTHO05D000640 5.8e-07 57.4 67 44.8
PSO063G1853 Papaver somniferum HOM05D000167 ORTHO05D000640 5.8e-07 57.4 58 43.1
QL10p014021 Quercus lobata HOM05D000167 ORTHO05D000640 5.8e-07 57.4 72 43.1
Thecc.06G178500 Theobroma cacao HOM05D000167 ORTHO05D000640 5.8e-07 57.4 72 43.1
TPR.G19972 Trifolium pratense HOM05D000167 ORTHO05D000640 5.8e-07 57.4 61 44.3
arahy.Tifrunner.gnm1.ann1.AET6CC Arachis hypogaea HOM05D000167 ORTHO05D000640 7.6e-07 57.0 56 48.2
EL10Ac7g17927 Beta vulgaris HOM05D000167 ORTHO05D000640 7.6e-07 57.0 60 38.3
Cfa014675 Carpinus fangiana HOM05D000167 ORTHO05D000640 7.6e-07 57.0 68 45.6
ClCG02G007640 Citrullus lanatus HOM05D000167 ORTHO05D000640 7.6e-07 57.0 77 39.0
Duzib235G1494 Durio zibethinus HOM05D000167 ORTHO05D000640 7.6e-07 57.0 78 39.7
Psat5g251280 Pisum sativum HOM05D000167 ORTHO05D000640 7.6e-07 57.0 61 42.6
Haze_13274 Corylus avellana HOM05D000167 ORTHO05D000640 9.9e-07 56.6 61 47.5
Haze_13276 Corylus avellana HOM05D000167 ORTHO05D000640 9.9e-07 56.6 61 47.5
Dinv19991 Davidia involucrata HOM05D000167 ORTHO05D000640 9.9e-07 56.6 56 50.0
CSS0026620 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000640 1.3e-06 56.2 72 45.8
Haze_13270 Corylus avellana HOM05D000167 ORTHO05D000640 1.3e-06 56.2 61 45.9
Medtr2g083380 Medicago truncatula HOM05D000167 ORTHO05D000640 1.3e-06 56.2 61 44.3
Nn1g04266 Nelumbo nucifera HOM05D000167 ORTHO05D000640 1.3e-06 56.2 71 38.0
Nn1g06384 Nelumbo nucifera HOM05D000167 ORTHO05D000640 1.3e-06 56.2 59 47.5
Nn1g06386 Nelumbo nucifera HOM05D000167 ORTHO05D000640 1.3e-06 56.2 59 47.5
Rhsim08G0070900 Rhododendron simsii HOM05D000167 ORTHO05D000640 1.3e-06 56.2 55 54.5
Thecc.06G178600 Theobroma cacao HOM05D000167 ORTHO05D000640 1.3e-06 56.2 72 41.7
EL10Ac7g17930 Beta vulgaris HOM05D000167 ORTHO05D000640 1.7e-06 55.8 60 35.0
DCAR_028036 Daucus carota HOM05D000167 ORTHO05D000640 1.7e-06 55.8 72 43.1
Nn1g09082 Nelumbo nucifera HOM05D000167 ORTHO05D000640 1.7e-06 55.8 56 53.6
QL10p014029 Quercus lobata HOM05D000167 ORTHO05D000640 1.7e-06 55.8 77 41.6
arahy.Tifrunner.gnm1.ann1.6J67DK Arachis hypogaea HOM05D000167 ORTHO05D000640 2.2e-06 55.5 56 51.8
arahy.Tifrunner.gnm1.ann1.BNFJ8I Arachis hypogaea HOM05D000167 ORTHO05D000640 2.2e-06 55.5 77 41.6
ClCG02G002250 Citrullus lanatus HOM05D000167 ORTHO05D000640 2.2e-06 55.5 57 47.4
Duzib132G0271 Durio zibethinus HOM05D000167 ORTHO05D000640 2.2e-06 55.5 56 50.0
Eucgr.K01076 Eucalyptus grandis HOM05D000167 ORTHO05D000640 2.2e-06 55.5 61 47.5
Eucgr.K01079 Eucalyptus grandis HOM05D000167 ORTHO05D000640 2.2e-06 55.5 61 47.5
FAN16G2297 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.2e-06 55.5 72 44.4
Lj8C292G4 Lonicera japonica HOM05D000167 ORTHO05D000640 2.2e-06 55.5 58 41.4
Lj8C292T2 Lonicera japonica HOM05D000167 ORTHO05D000640 2.2e-06 55.5 58 41.4
Lj3g0010922 Lotus japonicus HOM05D000167 ORTHO05D000640 2.2e-06 55.5 61 45.9
PSO017G3422 Papaver somniferum HOM05D000167 ORTHO05D000640 2.2e-06 55.5 58 41.4
Phvul.005G093300 Phaseolus vulgaris HOM05D000167 ORTHO05D000640 2.2e-06 55.5 76 39.5
Phvul.005G093600 Phaseolus vulgaris HOM05D000167 ORTHO05D000640 2.2e-06 55.5 61 45.9
CANSAT21G0121 Cannabis sativa HOM05D000167 ORTHO05D000640 2.9e-06 55.1 79 40.5
Cfa014678 Carpinus fangiana HOM05D000167 ORTHO05D000640 2.9e-06 55.1 61 45.9
Ca_01732_v3 Cicer arietinum L. HOM05D000167 ORTHO05D000640 2.9e-06 55.1 74 41.9
FvH4_3g08341 Fragaria vesca HOM05D000167 ORTHO05D000640 2.9e-06 55.1 72 43.1
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.9e-06 55.1 72 43.1
Glyma.12G132500 Glycine max HOM05D000167 ORTHO05D000640 2.9e-06 55.1 61 42.6
Medtr2g083390 Medicago truncatula HOM05D000167 ORTHO05D000640 2.9e-06 55.1 61 44.3
Sed0018404 Sechium edule HOM05D000167 ORTHO05D000640 2.9e-06 55.1 77 39.0
Haze_13275 Corylus avellana HOM05D000167 ORTHO05D000640 3.8e-06 54.7 61 47.5
MELO3C018849.2 Cucumis melo HOM05D000167 ORTHO05D000640 3.8e-06 54.7 61 42.6
DCAR_021269 Daucus carota HOM05D000167 ORTHO05D000640 3.8e-06 54.7 71 40.8
Dinv02426 Davidia involucrata HOM05D000167 ORTHO05D000640 3.8e-06 54.7 72 44.4
EL10Ac8g20459 Beta vulgaris HOM05D000167 ORTHO05D000640 4.9e-06 54.3 61 45.9
Ca_01730_v3 Cicer arietinum L. HOM05D000167 ORTHO05D000640 4.9e-06 54.3 61 44.3
Glyma.12G120200 Glycine max HOM05D000167 ORTHO05D000640 4.9e-06 54.3 61 45.9
Gohir.A06G201100 Gossypium hirsutum HOM05D000167 ORTHO05D000640 4.9e-06 54.3 72 41.7
PSO063G1280 Papaver somniferum HOM05D000167 ORTHO05D000640 4.9e-06 54.3 58 39.7
Phvul.005G093500 Phaseolus vulgaris HOM05D000167 ORTHO05D000640 4.9e-06 54.3 55 50.9
Psat5g251360 Pisum sativum HOM05D000167 ORTHO05D000640 4.9e-06 54.3 61 37.7
VMungo1080G1110 Vigna mungo HOM05D000167 ORTHO05D000640 4.9e-06 54.3 61 44.3
Glyma.06G285700 Glycine max HOM05D000167 ORTHO05D000640 6.4e-06 53.9 61 44.3
Lj3g0027551 Lotus japonicus HOM05D000167 ORTHO05D000640 6.4e-06 53.9 61 45.9
Psat7g137400 Pisum sativum HOM05D000167 ORTHO05D000640 6.4e-06 53.9 72 40.3
TWI38G1659 Tripterygium wilfordii HOM05D000167 ORTHO05D000640 6.4e-06 53.9 56 50.0
TWI59G0958 Tripterygium wilfordii HOM05D000167 ORTHO05D000640 6.4e-06 53.9 77 42.9
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 8.4e-06 53.5 77 40.3
Cfa014677 Carpinus fangiana HOM05D000167 ORTHO05D000640 8.4e-06 53.5 61 44.3
Ca_01729_v3 Cicer arietinum L. HOM05D000167 ORTHO05D000640 8.4e-06 53.5 61 44.3
MELO3C018853.2 Cucumis melo HOM05D000167 ORTHO05D000640 8.4e-06 53.5 57 45.6
Glyma.13G289000 Glycine max HOM05D000167 ORTHO05D000640 8.4e-06 53.5 62 45.2
Gohir.D06G208900 Gossypium hirsutum HOM05D000167 ORTHO05D000640 8.4e-06 53.5 72 41.7
Medtr2g083430 Medicago truncatula HOM05D000167 ORTHO05D000640 8.4e-06 53.5 61 41.0
Psat5g251320 Pisum sativum HOM05D000167 ORTHO05D000640 8.4e-06 53.5 61 39.3
Potri.011G061000 Populus trichocarpa HOM05D000167 ORTHO05D000640 8.4e-06 53.5 72 40.3
Sc05g0007350 Simmondsia chinensis HOM05D000167 ORTHO05D000640 8.4e-06 53.5 77 41.6


User provided reference genes

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