Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.1e-248 862.8 423 100.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 5.3e-163 578.2 409 68.7
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 6.0e-159 564.7 428 65.9
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.8e-158 563.1 417 65.7
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 6.7e-158 561.2 423 66.2
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.1e-157 560.5 428 64.5
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.1e-157 560.5 423 66.2
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.1e-157 560.5 422 65.6
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.9e-157 559.7 423 66.0
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 2.5e-157 559.3 428 64.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.5e-157 559.3 416 66.3
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 3.3e-157 558.9 416 65.1
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 3.3e-157 558.9 432 64.1
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.4e-155 553.5 424 64.9
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.8e-155 553.1 429 64.1
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 6.9e-155 551.2 415 65.3
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 9.0e-155 550.8 419 63.2
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.2e-154 550.4 422 64.9
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.0e-154 549.7 415 65.1
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.0e-154 549.7 415 65.1
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.3e-153 547.0 428 63.8
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.7e-153 546.6 416 64.4
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.7e-153 546.6 417 65.5
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 6.4e-153 544.7 424 61.6
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 6.4e-153 544.7 429 62.0
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 6.4e-153 544.7 413 64.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.1e-152 543.9 413 62.5
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.4e-152 543.5 424 61.6
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.9e-152 543.1 411 63.5
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.9e-152 543.1 426 64.8
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.4e-152 542.7 424 61.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 3.2e-152 542.3 430 63.5
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 3.2e-152 542.3 420 63.6
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 4.2e-152 542.0 424 63.0
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.6e-151 540.0 429 63.4
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.6e-151 540.0 411 62.0
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 2.1e-151 539.7 424 61.3
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 4.6e-151 538.5 411 62.8
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 7.9e-151 537.7 413 63.4
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.0e-150 537.3 415 63.6
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 6.7e-150 534.6 432 62.7
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 8.7e-150 534.3 411 62.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.5e-149 533.5 410 63.2
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.5e-149 533.5 415 63.4
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 2.5e-149 532.7 431 61.9
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 7.4e-149 531.2 421 62.9
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 7.4e-149 531.2 430 61.2
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.8e-148 529.3 422 63.0
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 3.7e-148 528.9 413 63.0
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 4.8e-148 528.5 420 63.3
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 8.2e-148 527.7 420 61.4
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.1e-147 527.3 422 60.9
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.4e-147 526.9 428 59.8
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.8e-147 526.6 425 63.1
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 2.4e-147 526.2 429 61.8
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 9.0e-147 524.2 424 62.7
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.6e-146 522.7 415 61.9
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 7.6e-146 521.2 422 61.6
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.0e-145 520.8 427 61.6
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-145 520.8 424 62.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 8.4e-145 517.7 425 62.1
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.4e-144 516.9 429 61.1
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 3.2e-144 515.8 427 60.0
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 4.2e-144 515.4 388 66.0
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 5.5e-144 515.0 413 60.5
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.2e-143 513.8 418 60.5
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 2.1e-143 513.1 428 60.7
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 4.6e-143 511.9 424 61.8
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 6.0e-143 511.5 397 64.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 6.0e-143 511.5 437 59.7
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.8e-142 510.0 431 59.9
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 3.9e-142 508.8 424 59.7
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 3.9e-142 508.8 424 61.3
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 6.7e-142 508.1 448 58.5
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-141 506.9 424 60.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.5e-141 506.1 416 60.8
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 9.7e-141 504.2 389 64.8
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.7e-140 502.3 417 60.2
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-139 500.4 464 57.1
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 6.9e-139 498.0 437 59.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 9.0e-139 497.7 442 58.6
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 2.5e-136 489.6 478 54.2
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 4.6e-135 485.3 415 59.5
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.0e-134 482.6 387 61.2
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.1e-133 480.7 429 57.1
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.9e-133 479.9 386 60.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 2.8e-132 476.1 472 54.0
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 8.2e-132 474.6 335 69.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.3e-129 467.2 434 54.8
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 8.5e-129 464.5 411 57.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.2e-128 462.6 442 56.8
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 4.2e-128 462.2 433 56.6
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.5e-128 461.8 303 70.0
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 2.1e-127 459.9 400 58.8
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.0e-126 457.6 425 53.6
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 8.8e-126 454.5 422 54.7
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.6e-125 453.0 333 66.1
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 7.4e-125 451.4 341 64.2
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.1e-123 447.6 285 70.9
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 2.4e-123 446.4 319 64.9
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 8.5e-121 438.0 416 55.3
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.1e-120 437.6 426 53.3
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.8e-118 430.3 292 65.4
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.4e-117 425.6 316 63.6
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 7.4e-117 424.9 409 54.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.3e-113 414.1 311 65.9
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 6.7e-110 401.7 308 61.7
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 9.1e-107 391.3 412 49.3
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 7.2e-104 381.7 437 49.4
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-99 367.5 318 58.8
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.7e-93 345.5 301 57.8
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.0e-86 324.7 274 61.3
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.5e-85 318.5 183 73.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.3e-76 291.2 461 38.4
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 4.4e-69 266.2 225 54.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 8.3e-68 261.9 274 52.6
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 2.1e-58 230.7 416 36.8
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 7.8e-58 228.8 373 39.1
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.1e-55 220.7 566 30.2
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 1.4e-46 191.4 254 45.3
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 2.8e-39 167.2 147 56.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.2e-37 161.8 195 44.1
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.7e-36 157.9 116 67.2
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 2.4e-30 137.5 105 62.9
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.5e-29 134.8 119 58.0
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 2.3e-25 120.9 255 34.5
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.9e-21 106.3 148 51.4
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.7e-18 97.4 126 48.4
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 3.1e-14 84.0 107 40.2
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.0e-12 76.6 48 72.9
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 8.8e-09 65.9 68 54.4


User provided reference genes

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