Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 9.5e-228 793.1 387 100.0
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 4.8e-139 498.4 407 63.6
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 4.6e-81 305.8 423 43.3
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.8e-80 303.9 399 42.9
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.1e-78 297.0 390 43.3
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 2.3e-72 276.9 388 40.7
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.3e-70 271.2 384 43.5
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 4.8e-70 269.2 389 39.3
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 5.3e-69 265.8 389 42.4
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 9.0e-69 265.0 387 40.8
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.2e-68 264.6 395 39.2
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 3.4e-68 263.1 388 41.5
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 7.6e-68 261.9 373 42.1
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 7.6e-68 261.9 384 41.1
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.0e-67 261.5 386 39.4
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 1.3e-67 261.2 378 40.2
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.7e-67 260.8 385 41.0
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 1.7e-67 260.8 390 39.5
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 2.2e-67 260.4 391 41.4
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 4.9e-67 259.2 386 39.6
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 8.4e-67 258.5 379 38.8
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.1e-66 258.1 385 40.0
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.9e-66 257.3 382 42.4
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.9e-66 257.3 385 40.0
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 1.9e-66 257.3 385 40.0
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-66 257.3 390 37.7
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 2.5e-66 256.9 378 40.5
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 3.2e-66 256.5 385 40.0
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 5.5e-66 255.8 387 38.8
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 7.1e-66 255.4 380 39.2
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 7.1e-66 255.4 390 39.7
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 1.6e-65 254.2 394 39.3
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 3.5e-65 253.1 385 39.2
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 3.5e-65 253.1 388 39.9
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.6e-65 252.7 385 39.7
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 6.0e-65 252.3 388 38.4
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 7.9e-65 251.9 378 38.4
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 7.9e-65 251.9 385 38.4
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.0e-64 251.5 388 39.4
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.3e-64 251.1 385 38.7
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 1.3e-64 251.1 385 38.7
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 1.3e-64 251.1 393 36.9
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.3e-64 251.1 388 39.4
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 3.9e-64 249.6 390 39.2
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 6.7e-64 248.8 387 39.0
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 1.5e-63 247.7 394 38.6
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 3.3e-63 246.5 382 39.8
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 7.4e-63 245.4 378 37.8
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 7.4e-63 245.4 378 37.8
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 9.7e-63 245.0 367 37.1
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.3e-62 244.6 383 38.1
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.6e-62 244.2 386 38.6
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 1.6e-62 244.2 387 37.5
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 2.2e-62 243.8 404 38.4
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.8e-62 243.4 386 38.3
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 2.8e-62 243.4 386 38.3
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.7e-62 243.0 382 38.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 4.8e-62 242.7 385 37.7
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.8e-61 240.7 399 38.1
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.1e-61 240.0 395 38.0
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 4.1e-61 239.6 378 38.6
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 4.1e-61 239.6 395 35.7
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 5.3e-61 239.2 410 36.6
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 1.2e-60 238.0 391 37.3
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.0e-60 237.3 381 38.3
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 4.5e-60 236.1 392 37.0
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 5.9e-60 235.7 384 38.3
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 7.7e-60 235.3 387 37.0
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.2e-59 233.8 374 37.2
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 3.8e-59 233.0 392 38.3
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 5.0e-59 232.6 394 39.3
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 8.5e-59 231.9 401 36.7
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.1e-58 231.5 392 36.0
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-58 231.1 385 36.1
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 1.9e-58 230.7 388 38.7
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.9e-58 230.7 387 38.0
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.9e-58 230.7 401 36.7
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 1.2e-57 228.0 390 34.9
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 3.0e-56 223.4 391 36.3
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.9e-56 223.0 368 35.1
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 5.1e-56 222.6 382 37.2
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 1.5e-55 221.1 386 37.8
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 1.5e-55 221.1 354 39.0
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 2.0e-55 220.7 385 33.2
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 4.3e-55 219.5 393 35.9
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.7e-55 219.2 380 36.3
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 1.3e-54 218.0 389 36.5
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 3.7e-54 216.5 387 37.2
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 6.3e-54 215.7 342 38.0
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 8.2e-54 215.3 390 35.1
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.4e-53 214.5 352 36.1
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-53 214.5 367 35.7
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 4.1e-53 213.0 411 33.1
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 4.1e-53 213.0 386 34.5
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.3e-53 212.6 388 36.1
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 2.0e-52 210.7 377 36.6
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 2.0e-52 210.7 381 36.0
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 5.9e-52 209.1 388 34.3
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 1.0e-51 208.4 384 38.0
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-51 207.2 403 36.2
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.9e-51 206.8 381 35.7
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 6.5e-51 205.7 385 36.4
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 1.1e-50 204.9 388 35.1
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 3.2e-50 203.4 429 31.9
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 3.2e-50 203.4 390 36.4
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.2e-50 203.4 405 35.1
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.2e-50 203.0 392 34.2
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 9.4e-50 201.8 388 34.8
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 2.7e-49 200.3 387 34.9
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 2.7e-49 200.3 385 34.3
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 2.7e-49 200.3 428 33.6
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 7.9e-49 198.7 387 34.6
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.0e-48 198.4 388 34.8
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-48 198.0 409 34.7
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.8e-48 197.6 391 34.5
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 2.3e-48 197.2 364 33.2
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 2.3e-48 197.2 378 33.1
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 3.9e-48 196.4 388 34.0
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 5.1e-48 196.1 386 33.4
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 1.5e-47 194.5 377 32.6
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 3.3e-47 193.4 385 33.5
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 2.8e-46 190.3 347 34.6
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 2.8e-46 190.3 347 34.6
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 4.8e-46 189.5 386 33.4
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 4.8e-46 189.5 347 34.3
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 8.2e-46 188.7 346 33.5
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 8.2e-46 188.7 344 34.6
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 8.2e-46 188.7 344 34.6
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 8.2e-46 188.7 397 33.5
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 1.1e-45 188.3 403 33.0
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 4.5e-44 183.0 426 33.1
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 5.9e-44 182.6 284 38.0
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 3.8e-43 179.9 386 32.4
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 3.8e-43 179.9 385 33.0
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 5.0e-43 179.5 386 32.1
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 5.5e-42 176.0 288 37.5
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 7.2e-42 175.6 388 31.2
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 6.1e-41 172.6 390 31.5
ATR0561G235 Amborella trichopoda HOM05D003325 ORTHO05D003852 5.2e-40 169.5 103 76.7
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 6.7e-40 169.1 363 33.3
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.7e-38 164.5 293 37.9
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 4.8e-38 162.9 384 29.7
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 5.3e-37 159.5 361 31.3
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 7.0e-37 159.1 385 31.2
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 5.9e-36 156.0 409 30.6
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.8e-35 153.3 299 31.8
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 6.5e-35 152.5 299 31.1
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.5e-34 151.4 368 30.4
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.6e-33 146.7 405 28.4
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 1.0e-32 145.2 162 45.1
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 5.2e-32 142.9 189 46.0
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 8.8e-32 142.1 209 36.4
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 8.8e-32 142.1 326 32.5
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.7e-31 139.4 190 40.0
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 2.8e-30 137.1 223 36.3
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 2.4e-29 134.0 376 27.7
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 1.7e-27 127.9 234 33.8
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.7e-25 120.6 155 39.4
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.6e-23 114.0 167 41.9
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.4e-21 107.5 132 44.7
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-20 105.1 117 45.3
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.3e-19 101.7 174 40.2
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 6.6e-19 99.4 328 27.4
SEGI_12810 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 5.5e-18 96.3 157 32.5
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-17 95.1 220 30.5
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 3.6e-17 93.6 210 28.6
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 8.0e-17 92.4 205 33.2
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 1.2e-15 88.6 110 49.1
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 7.5e-15 85.9 78 51.3
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 1.3e-14 85.1 111 43.2
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 3.7e-14 83.6 87 47.1
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 1.8e-13 81.3 163 35.0
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 4.1e-13 80.1 370 24.3
TPR.G496 Trifolium pratense HOM05D003325 ORTHO05D003852 7.3e-10 69.3 125 37.6
Aqoxy1G03157 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 1.8e-08 64.7 71 43.7
Aqoxy1G03342 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 1.8e-08 64.7 71 43.7
Aqoxy2G00205 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 4.0e-08 63.5 71 43.7
SEGI_40826 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 4.0e-08 63.5 67 43.3
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 9.8e-07 58.9 52 50.0
HanXRQChr13g0403611 Helianthus annuus HOM05D003325 ORTHO05D003852 9.8e-07 58.9 82 37.8
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 1.7e-06 58.2 60 46.7


User provided reference genes

Program Settings