Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.3e-65 252.3 150 100.0
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 9.3e-30 134.0 113 62.8
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.6e-29 131.7 120 62.5
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 5.1e-28 128.3 109 73.4
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.9e-27 126.3 111 61.3
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 5.6e-27 124.8 114 58.8
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.3e-26 123.6 108 63.0
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.3e-26 123.6 112 59.8
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.6e-26 123.2 110 60.0
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 8.2e-26 120.9 117 57.3
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.8e-25 119.8 111 59.5
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.4e-25 119.4 108 58.3
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.5e-24 116.7 98 64.3
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 2.6e-24 115.9 69 79.7
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.5e-24 115.2 115 59.1
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.8e-24 114.8 98 62.2
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.0e-23 114.0 121 57.0
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.7e-23 113.2 109 58.7
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.7e-23 113.2 113 57.5
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.7e-23 113.2 111 57.7
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 2.2e-23 112.8 69 76.8
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.9e-23 112.5 115 58.3
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.9e-23 112.5 140 48.6
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.9e-23 112.5 109 54.1
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.9e-23 112.5 109 54.1
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.8e-23 112.1 110 56.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 4.9e-23 111.7 69 75.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 4.9e-23 111.7 115 59.1
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 6.5e-23 111.3 70 75.7
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 6.5e-23 111.3 122 56.6
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 8.4e-23 110.9 70 75.7
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 8.4e-23 110.9 112 51.8
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.1e-22 110.5 126 51.6
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.1e-22 110.5 126 51.6
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.1e-22 110.5 126 51.6
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.1e-22 110.5 126 51.6
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.9e-22 109.8 122 53.3
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 2.5e-22 109.4 111 55.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.5e-22 109.4 114 54.4
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 3.2e-22 109.0 126 51.6
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 3.2e-22 109.0 103 57.3
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 4.2e-22 108.6 71 74.6
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 5.5e-22 108.2 108 54.6
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 5.5e-22 108.2 115 54.8
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.5e-22 108.2 135 48.9
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 9.3e-22 107.5 126 50.8
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.3e-22 107.5 114 55.3
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 9.3e-22 107.5 70 72.9
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 1.2e-21 107.1 116 54.3
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.6e-21 106.7 122 50.8
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.6e-21 106.7 69 76.8
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.1e-21 106.3 111 54.1
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 2.7e-21 105.9 111 55.0
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.7e-21 105.9 111 53.2
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 4.6e-21 105.1 110 56.4
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 4.6e-21 105.1 68 73.5
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 7.9e-21 104.4 121 52.1
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 7.9e-21 104.4 121 52.1
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 7.9e-21 104.4 69 72.5
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 7.9e-21 104.4 69 73.9
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 7.9e-21 104.4 113 53.1
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.0e-20 104.0 69 72.5
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.0e-20 104.0 122 52.5
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-20 103.6 114 50.9
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.3e-20 103.6 114 50.9
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.3e-20 103.6 70 70.0
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.3e-20 103.6 69 69.6
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.3e-20 103.6 66 74.2
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.8e-20 103.2 119 52.1
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.0e-20 102.4 107 53.3
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 3.0e-20 102.4 113 52.2
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 8.7e-20 100.9 115 51.3
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.1e-19 100.5 133 51.9
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.9e-19 99.8 139 46.0
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.9e-19 99.8 106 52.8
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 2.5e-19 99.4 68 69.1
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 3.3e-19 99.0 133 51.9
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 4.3e-19 98.6 112 50.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 5.7e-19 98.2 64 75.0
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 5.7e-19 98.2 68 70.6
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 7.4e-19 97.8 122 50.0
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 1.3e-18 97.1 113 52.2
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.3e-18 97.1 64 73.4
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.3e-18 97.1 64 73.4
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-18 97.1 119 49.6
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.3e-18 97.1 125 47.2
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.6e-18 96.7 126 48.4
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.6e-18 96.7 69 66.7
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.2e-18 96.3 127 41.7
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 4.8e-18 95.1 112 53.6
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 4.8e-18 95.1 108 50.9
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 4.8e-18 95.1 64 71.9
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.4e-17 92.8 112 50.0
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 3.1e-17 92.4 110 47.3
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 6.9e-17 91.3 68 66.2
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 9.0e-17 90.9 129 48.1
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.4e-16 89.0 69 66.7
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 7.6e-16 87.8 113 48.7
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-15 87.4 117 53.0
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.9e-15 85.9 67 65.7
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.9e-15 85.9 107 45.8
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.0e-15 85.1 117 55.6
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 5.0e-15 85.1 66 62.1
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 6.5e-15 84.7 111 45.0
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 8.5e-15 84.3 67 64.2
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.1e-14 84.0 117 60.7
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.4e-14 83.6 124 50.8
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.9e-14 83.2 117 46.2
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.5e-14 82.8 67 62.7
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 3.2e-14 82.4 117 44.4
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.2e-14 82.4 117 44.4
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 4.2e-14 82.0 120 46.7
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.2e-14 82.0 111 41.4
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 4.2e-14 82.0 69 56.5
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 5.5e-14 81.6 84 54.8
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.3e-14 80.9 117 46.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 9.3e-14 80.9 67 58.2
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.2e-13 80.5 74 60.8
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 5.1e-12 75.1 86 47.7
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 5.1e-12 75.1 43 83.7
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 6.7e-12 74.7 72 56.9
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.5e-11 73.6 55 69.1
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.9e-11 73.2 111 40.5
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 7.4e-11 71.2 55 67.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 9.7e-11 70.9 106 43.4
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 9.7e-11 70.9 124 40.3
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.2e-10 69.7 115 40.0
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.4e-09 66.2 58 55.2
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 4.1e-09 65.5 43 69.8
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.9e-09 64.7 45 68.9
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.9e-09 64.7 45 68.9
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.9e-09 64.7 45 68.9
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 6.9e-09 64.7 107 37.4
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 3.4e-08 62.4 64 53.1
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.5e-08 62.0 43 69.8
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.0e-07 60.8 41 68.3
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.9e-06 56.6 58 53.4
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.5e-06 56.2 87 46.0
MCO04G144 Micromonas commoda HOM05D004927 ORTHO05D005798 9.4e-06 54.3 43 51.2
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 9.4e-06 54.3 59 45.8


User provided reference genes

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