Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.4e-262 909.1 453 100.0
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 6.6e-212 740.7 450 79.8
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 8.0e-210 733.8 453 77.7
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 9.8e-208 726.9 447 79.0
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.4e-206 723.0 449 77.3
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 9.2e-206 720.3 449 77.7
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 8.6e-204 713.8 453 76.8
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.9e-203 712.6 452 77.4
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 3.3e-203 711.8 431 78.0
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 2.1e-202 709.1 448 77.2
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 2.8e-202 708.8 452 75.7
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 3.6e-202 708.4 438 77.4
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 3.6e-202 708.4 450 74.7
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 6.2e-202 707.6 468 73.5
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.1e-201 706.8 451 76.7
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.1e-201 706.8 451 73.8
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.8e-201 706.1 444 75.9
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 5.2e-201 704.5 455 75.4
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 6.8e-201 704.1 437 77.6
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 8.9e-201 703.7 448 74.8
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.2e-200 703.4 448 74.3
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.5e-200 703.0 450 75.6
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 1.5e-200 703.0 456 74.6
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 5.8e-200 701.0 449 74.6
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 9.8e-200 700.3 448 75.0
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.7e-199 699.5 455 74.9
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.7e-199 699.5 448 74.3
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.7e-199 699.5 453 75.3
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 2.2e-199 699.1 448 74.3
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.2e-199 699.1 448 74.6
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 8.3e-199 697.2 477 72.7
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 1.4e-198 696.4 452 74.8
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 1.4e-198 696.4 449 75.5
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.9e-198 696.0 450 74.4
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 1.9e-198 696.0 452 73.9
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.4e-198 695.7 455 74.3
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 3.2e-198 695.3 456 73.5
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 4.1e-198 694.9 445 74.2
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.2e-197 693.3 452 73.0
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.2e-197 693.3 445 74.4
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 1.6e-197 693.0 456 72.4
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.0e-197 692.6 445 73.5
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.0e-196 690.3 451 74.3
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.0e-196 690.3 461 72.9
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 1.3e-196 689.9 481 70.5
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.3e-196 689.9 451 75.6
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.7e-196 689.5 447 72.9
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 3.9e-196 688.3 452 71.9
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 1.1e-195 686.8 447 73.4
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.1e-195 686.8 447 72.7
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.1e-195 686.8 434 75.6
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.9e-195 686.0 437 76.0
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 1.9e-195 686.0 453 72.4
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 3.3e-195 685.3 433 74.6
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 5.6e-195 684.5 452 74.1
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 9.5e-195 683.7 437 75.3
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 1.2e-194 683.3 454 71.4
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.6e-194 682.9 453 72.0
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 6.2e-194 681.0 447 72.7
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 8.1e-194 680.6 448 73.2
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.4e-193 679.9 447 75.4
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 2.3e-193 679.1 455 72.5
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 2.3e-193 679.1 454 71.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 8.9e-193 677.2 454 70.9
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 4.4e-192 674.9 430 74.9
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 5.8e-192 674.5 452 70.6
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 5.8e-192 674.5 452 70.8
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 7.5e-192 674.1 452 70.6
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 7.5e-192 674.1 457 71.3
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 2.2e-191 672.5 456 71.5
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 3.7e-191 671.8 452 70.8
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 3.7e-191 671.8 431 73.1
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 3.2e-190 668.7 448 73.7
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 4.1e-190 668.3 447 72.3
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 9.2e-190 667.2 452 71.0
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 1.2e-189 666.8 473 67.9
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 2.1e-189 666.0 469 68.4
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 6.0e-189 664.5 452 70.6
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 6.0e-189 664.5 456 70.8
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.3e-188 663.3 465 68.6
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 3.0e-188 662.1 472 67.6
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 5.1e-188 661.4 448 71.7
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 6.6e-188 661.0 445 71.0
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 3.3e-187 658.7 450 69.6
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 9.5e-187 657.1 481 66.1
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.1e-186 656.0 448 70.8
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 4.7e-186 654.8 497 68.4
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 1.6e-181 639.8 451 70.3
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 5.1e-180 634.8 460 68.0
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 9.6e-179 630.6 463 67.8
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.6e-178 629.8 406 75.9
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 2.8e-178 629.0 484 67.4
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 4.7e-178 628.2 412 73.5
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 4.4e-176 621.7 484 63.2
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 2.9e-175 619.0 387 75.5
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 4.9e-175 618.2 447 68.0
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 2.7e-173 612.5 412 70.6
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 6.2e-170 601.3 409 71.4
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 9.0e-169 597.4 456 64.0
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 7.1e-166 587.8 376 74.5
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 9.3e-166 587.4 460 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 5.6e-163 578.2 448 62.5
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 1.1e-161 573.9 447 64.0
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.2e-160 570.5 465 63.2
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 3.4e-160 568.9 448 64.5
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 4.2e-158 562.0 430 60.9
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.1e-155 553.9 430 62.3
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 2.0e-152 543.1 431 59.4
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 9.3e-150 534.3 320 79.7
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 2.6e-131 473.0 277 80.5
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 5.7e-131 471.9 456 55.9
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.3e-116 423.3 447 54.6
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 3.5e-112 409.5 434 44.9
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 5.4e-105 385.6 424 47.4
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 1.0e-95 354.8 315 60.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 2.9e-95 353.2 367 53.4
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.9e-89 334.0 182 85.7
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 2.1e-85 320.5 493 37.7
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 1.2e-56 224.9 168 66.1
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 1.9e-54 217.6 338 39.9
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 4.8e-53 213.0 108 87.0
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 1.5e-51 208.0 371 38.8
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 1.0e-39 168.7 124 71.8
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 2.3e-39 167.5 124 67.7
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 1.1e-38 165.2 360 32.8
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 4.8e-37 159.8 137 61.3
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 2.2e-29 134.4 83 67.5
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 2.9e-26 124.0 101 61.4
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 4.2e-25 120.2 120 51.7
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.7e-21 108.2 53 83.0
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.1e-20 105.5 215 31.2
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 2.4e-20 104.4 68 66.2
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 7.7e-19 99.4 75 62.7
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 5.5e-17 93.2 73 61.6
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 3.6e-16 90.5 66 63.6
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 4.7e-16 90.1 104 47.1
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 8.8e-15 85.9 57 73.7
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 1.1e-12 79.0 101 43.6


User provided reference genes

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