Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 0.0e+00 1131.3 553 100.0
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 1.2e-202 710.3 476 70.8
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 3.5e-199 698.7 466 70.8
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 3.9e-198 695.3 467 70.0
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 1.5e-197 693.3 476 68.3
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 3.3e-197 692.2 501 67.3
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.3e-197 692.2 505 66.3
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 4.3e-197 691.8 469 69.3
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 4.3e-197 691.8 489 67.9
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 9.5e-197 690.6 449 71.9
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.8e-196 689.1 486 67.5
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 1.1e-195 687.2 467 69.8
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.1e-195 687.2 468 68.6
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 2.3e-195 686.0 465 69.0
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 4.0e-195 685.3 474 67.9
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 2.6e-194 682.6 463 68.5
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.4e-194 681.8 467 69.4
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 5.8e-194 681.4 463 68.9
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.7e-193 679.9 495 66.1
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 3.7e-193 678.7 473 68.7
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 3.7e-193 678.7 515 64.9
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 8.3e-193 677.6 461 69.8
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.1e-192 677.2 467 69.2
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 4.1e-192 675.2 495 65.9
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 4.1e-192 675.2 471 67.9
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 5.4e-192 674.9 467 69.4
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.6e-191 673.3 518 63.5
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 2.7e-191 672.5 519 63.2
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 6.0e-191 671.4 467 67.9
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.3e-190 670.2 519 63.0
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 3.0e-190 669.1 474 65.8
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.9e-190 668.7 438 70.5
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 8.6e-190 667.5 472 68.0
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 1.1e-189 667.2 440 69.5
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 1.5e-189 666.8 462 68.2
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 1.5e-189 666.8 466 67.4
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 3.3e-189 665.6 463 67.0
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 1.2e-188 663.7 465 68.0
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.6e-188 663.3 480 67.5
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 2.1e-188 662.9 452 68.4
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.1e-188 662.9 452 68.6
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 2.1e-188 662.9 505 64.6
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 3.6e-188 662.1 472 67.8
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 1.8e-187 659.8 472 66.9
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 2.3e-187 659.4 479 66.2
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 4.0e-187 658.7 465 67.3
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 4.0e-187 658.7 494 64.6
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 5.2e-187 658.3 512 64.3
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.2e-186 657.1 464 67.2
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.7e-185 653.3 471 65.6
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 2.2e-185 652.9 486 64.6
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 6.4e-185 651.4 468 64.5
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 8.3e-185 651.0 513 62.2
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 8.3e-185 651.0 441 68.9
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 3.2e-184 649.0 473 64.3
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 5.4e-184 648.3 484 63.0
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 7.1e-184 647.9 449 68.6
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 9.2e-184 647.5 484 63.2
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.2e-183 647.1 489 63.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.2e-183 647.1 492 63.4
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.6e-183 646.7 467 64.0
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 2.7e-183 646.0 477 64.4
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 2.7e-183 646.0 498 62.0
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 4.6e-183 645.2 479 64.7
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 4.6e-183 645.2 493 63.3
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 4.6e-183 645.2 489 63.6
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.7e-182 643.3 464 65.9
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.1e-181 640.6 483 64.6
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 6.2e-180 634.8 502 61.2
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 6.2e-180 634.8 501 63.3
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 3.1e-179 632.5 503 62.0
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.4e-178 628.6 470 63.8
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 9.9e-178 627.5 549 57.9
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 8.4e-177 624.4 515 61.2
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.3e-172 610.5 449 67.0
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.1e-172 609.8 473 61.9
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 2.1e-172 609.8 479 63.7
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 6.2e-172 608.2 464 62.3
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 2.6e-170 602.8 482 60.6
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.7e-169 600.1 512 59.4
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.4e-168 597.0 418 68.7
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 2.4e-168 596.3 438 65.3
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.2e-168 595.9 497 59.8
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 3.1e-163 579.3 464 60.1
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 6.9e-163 578.2 403 67.0
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 6.2e-156 555.1 473 55.4
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.7e-153 547.0 476 53.8
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.2e-152 542.7 519 54.9
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 5.8e-146 521.9 509 54.2
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 2.3e-142 510.0 443 53.7
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 2.9e-137 493.0 323 72.8
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 1.9e-136 490.3 341 68.9
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 6.7e-134 481.9 315 70.8
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.8e-132 475.7 362 64.6
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 4.2e-128 462.6 465 51.8
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.4e-123 447.6 340 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 5.9e-122 442.2 402 52.0
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.5e-120 437.6 386 56.0
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 2.4e-115 420.2 301 63.8
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 8.8e-110 401.7 381 51.7
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.5e-109 401.0 265 70.9
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 2.3e-97 360.5 296 62.2
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.4e-91 341.3 388 47.7
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 2.3e-78 297.4 248 57.7
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 9.2e-75 285.4 230 59.6
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 4.6e-74 283.1 234 60.3
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 2.8e-71 273.9 271 52.8
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 3.2e-67 260.4 212 60.4
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.9e-64 251.1 528 30.5
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.2e-44 184.5 180 51.1
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 1.1e-32 145.6 432 27.5
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.3e-28 132.1 133 51.9
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 2.1e-26 124.8 89 62.9
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 4.6e-26 123.6 88 65.9
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 7.9e-26 122.9 378 26.5
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 5.0e-20 103.6 73 64.4
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.0e-17 94.4 88 56.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.9e-17 94.0 63 63.5
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.4e-16 90.5 175 31.4
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.0e-12 77.0 78 53.8
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 1.6e-10 72.0 38 73.7
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.7e-09 66.6 85 42.4
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 3.3e-08 64.3 59 50.8
Cfa003614 Carpinus fangiana HOM05D005216 ORTHO05D006453 7.4e-08 63.2 319 24.8
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 4.8e-07 60.5 62 48.4
arahy.Tifrunner.gnm1.ann1.CL3NUC Arachis hypogaea HOM05D005216 ORTHO05D006453 1.8e-06 58.5 319 25.1
HPP92_002841 Vanilla planifolia HOM05D005216 ORTHO05D006453 2.4e-06 58.2 296 23.0
Hund27772 Selenicereus undatus HOM05D005216 ORTHO05D006453 5.3e-06 57.0 222 27.0
Hund27776 Selenicereus undatus HOM05D005216 ORTHO05D006453 5.3e-06 57.0 222 27.0


User provided reference genes

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