Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G013 Amborella trichopoda HOM05D007138 ORTHO05D009148 0.0e+00 1823.5 950 100.0
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 1.5e-16 92.8 134 38.1
Nn1g08135 Nelumbo nucifera HOM05D007138 ORTHO05D009148 1.7e-15 89.4 220 34.1
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 3.1e-14 85.1 151 35.1
TAR365G0398 Trochodendron aralioides HOM05D007138 ORTHO05D009148 3.1e-14 85.1 126 40.5
Atru.chr3.1784 Acer truncatum HOM05D007138 ORTHO05D009148 4.1e-14 84.7 151 35.1
Haze_11677 Corylus avellana HOM05D007138 ORTHO05D009148 5.4e-14 84.3 112 42.9
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 7.0e-14 84.0 115 43.5
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 7.0e-14 84.0 115 43.5
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 7.0e-14 84.0 115 43.5
QL06p027005 Quercus lobata HOM05D007138 ORTHO05D009148 1.6e-13 82.8 156 36.5
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 1.6e-13 82.8 137 36.5
Dinv27178 Davidia involucrata HOM05D007138 ORTHO05D009148 2.0e-13 82.4 138 38.4
Gorai.006G224900 Gossypium raimondii HOM05D007138 ORTHO05D009148 7.7e-13 80.5 110 40.9
THA.LOC104804782 Tarenaya hassleriana HOM05D007138 ORTHO05D009148 7.7e-13 80.5 119 38.7
CiPaw.01G114100 Carya illinoinensis HOM05D007138 ORTHO05D009148 1.0e-12 80.1 112 41.1
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 1.0e-12 80.1 115 43.5
Gohir.D09G201200 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.3e-12 79.7 205 31.7
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 1.3e-12 79.7 169 33.7
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 1.3e-12 79.7 133 39.1
Gohir.A09G207700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.7e-12 79.3 205 31.2
GSVIVG01031579001 Vitis vinifera HOM05D007138 ORTHO05D009148 1.7e-12 79.3 161 36.0
MD04G1019900 Malus domestica HOM05D007138 ORTHO05D009148 2.3e-12 79.0 204 30.9
Cfa008656 Carpinus fangiana HOM05D007138 ORTHO05D009148 3.8e-12 78.2 203 31.5
Manes.01G054400 Manihot esculenta HOM05D007138 ORTHO05D009148 8.6e-12 77.0 110 40.9
Os01g0101800 Oryza sativa ssp. japonica HOM05D007138 ORTHO05D009148 8.6e-12 77.0 145 35.9
CsaV3_6G009270 Cucumis sativus L. HOM05D007138 ORTHO05D009148 1.5e-11 76.3 112 38.4
Sabra02G0180000 Salix brachista HOM05D007138 ORTHO05D009148 1.5e-11 76.3 215 29.3
Zm00001eb334100 Zea mays HOM05D007138 ORTHO05D009148 1.5e-11 76.3 168 31.5
Aqoxy2G03906 Aquilegia oxysepala HOM05D007138 ORTHO05D009148 1.9e-11 75.9 129 38.8
EL10Ac3g07428 Beta vulgaris HOM05D007138 ORTHO05D009148 1.9e-11 75.9 166 34.3
CANSAT78G1621 Cannabis sativa HOM05D007138 ORTHO05D009148 2.5e-11 75.5 112 35.7
Gorai.005G025100 Gossypium raimondii HOM05D007138 ORTHO05D009148 2.5e-11 75.5 110 39.1
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 2.5e-11 75.5 126 36.5
Potri.002G236300 Populus trichocarpa HOM05D007138 ORTHO05D009148 3.2e-11 75.1 138 36.2
Glyma.08G107400 Glycine max HOM05D007138 ORTHO05D009148 5.5e-11 74.3 146 36.3
Gohir.A02G017700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 5.5e-11 74.3 110 39.1
Duzib151G0530 Durio zibethinus HOM05D007138 ORTHO05D009148 7.2e-11 73.9 128 36.7
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 7.2e-11 73.9 134 38.1
Medtr8g083310 Medicago truncatula HOM05D007138 ORTHO05D009148 9.5e-11 73.6 111 37.8
Psat0s4823g0040 Pisum sativum HOM05D007138 ORTHO05D009148 9.5e-11 73.6 111 37.8
Zm00001eb127090 Zea mays HOM05D007138 ORTHO05D009148 9.5e-11 73.6 113 37.2
MELO3C021153.2 Cucumis melo HOM05D007138 ORTHO05D009148 1.2e-10 73.2 127 34.6
Ca_18004_v3 Cicer arietinum L. HOM05D007138 ORTHO05D009148 1.6e-10 72.8 144 33.3
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 2.1e-10 72.4 111 37.8
Sc13g0000510 Simmondsia chinensis HOM05D007138 ORTHO05D009148 2.1e-10 72.4 119 32.8
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 3.6e-10 71.6 139 35.3
Eucgr.H02635 Eucalyptus grandis HOM05D007138 ORTHO05D009148 3.6e-10 71.6 113 39.8
Gohir.D02G019900 Gossypium hirsutum HOM05D007138 ORTHO05D009148 3.6e-10 71.6 110 38.2
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 8.0e-10 70.5 110 38.2
Nitab4.5_0000037g0170 Nicotiana tabacum HOM05D007138 ORTHO05D009148 1.0e-09 70.1 113 39.8
Glyma.05G150500 Glycine max HOM05D007138 ORTHO05D009148 1.4e-09 69.7 148 34.5
Hund25334 Selenicereus undatus HOM05D007138 ORTHO05D009148 1.4e-09 69.7 130 34.6
AUR62018524 Chenopodium quinoa HOM05D007138 ORTHO05D009148 1.8e-09 69.3 112 34.8
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 2.3e-09 68.9 110 37.3
Prupe.1G169400 Prunus persica HOM05D007138 ORTHO05D009148 2.3e-09 68.9 463 22.9
ClCG06G003170 Citrullus lanatus HOM05D007138 ORTHO05D009148 3.0e-09 68.6 112 35.7
Peaxi162Scf00286g01047 Petunia axillaris HOM05D007138 ORTHO05D009148 3.0e-09 68.6 129 36.4
Phvul.003G291400 Phaseolus vulgaris HOM05D007138 ORTHO05D009148 3.0e-09 68.6 111 38.7
VMungo0251G1281 Vigna mungo HOM05D007138 ORTHO05D009148 4.0e-09 68.2 112 38.4
AUR62020894 Chenopodium quinoa HOM05D007138 ORTHO05D009148 5.2e-09 67.8 112 33.0
Thhalv10002448m.g Eutrema salsugineum HOM05D007138 ORTHO05D009148 5.2e-09 67.8 113 34.5
Lalb_Chr12g0205841 Lupinus albus HOM05D007138 ORTHO05D009148 5.2e-09 67.8 251 27.5
Solyc09g092510.3 Solanum lycopersicum HOM05D007138 ORTHO05D009148 6.8e-09 67.4 126 35.7
SalBow2G0985 Salvia bowleyana HOM05D007138 ORTHO05D009148 8.8e-09 67.0 123 37.4
SalBow2G2858 Salvia bowleyana HOM05D007138 ORTHO05D009148 8.8e-09 67.0 123 37.4
Sed0014888 Sechium edule HOM05D007138 ORTHO05D009148 8.8e-09 67.0 110 37.3
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 8.8e-09 67.0 111 36.9
BcaB06g26533 Brassica carinata HOM05D007138 ORTHO05D009148 1.5e-08 66.2 140 31.4
CARHR099730 Cardamine hirsuta HOM05D007138 ORTHO05D009148 2.0e-08 65.9 113 33.6
AT3G23740 Arabidopsis thaliana HOM05D007138 ORTHO05D009148 2.6e-08 65.5 113 35.4
PGR083G1257 Punica granatum HOM05D007138 ORTHO05D009148 2.6e-08 65.5 126 34.1
Sp3g21450 Schrenkiella parvula HOM05D007138 ORTHO05D009148 2.6e-08 65.5 113 34.5
PGSC0003DMG400021869 Solanum tuberosum HOM05D007138 ORTHO05D009148 3.4e-08 65.1 113 36.3
Ah.04g149560 Amaranthus hybridus HOM05D001269 ORTHO05D001083 9.8e-08 63.5 117 31.6
AL3G38640 Arabidopsis lyrata HOM05D007138 ORTHO05D009148 1.3e-07 63.2 113 33.6
Lj4g0024791 Lotus japonicus HOM05D007138 ORTHO05D009148 1.3e-07 63.2 144 32.6
Oeu034315.1 Olea europaea HOM05D007138 ORTHO05D009148 1.7e-07 62.8 138 34.1
Cc03_g09210 Coffea canephora HOM05D007138 ORTHO05D009148 2.2e-07 62.4 114 39.5
ECA233G0560 Erigeron canadensis HOM05D007138 ORTHO05D009148 3.7e-07 61.6 141 29.8
BcaC06g35563 Brassica carinata HOM05D007138 ORTHO05D009148 6.3e-07 60.8 113 33.6
unitig_747.g21666 Utricularia gibba HOM05D007138 ORTHO05D009148 8.3e-07 60.5 113 37.2
A07p08650 Brassica napus HOM05D007138 ORTHO05D009148 1.4e-06 59.7 113 32.7
BraA07t28655Z Brassica rapa HOM05D007138 ORTHO05D009148 1.4e-06 59.7 113 32.7
Carub.0003s2404 Capsella rubella HOM05D007138 ORTHO05D009148 1.4e-06 59.7 113 31.9
Aa31LG8G10280 Aethionema arabicum HOM05D007138 ORTHO05D009148 2.4e-06 58.9 120 31.7
Migut.G00946 Erythranthe guttata HOM05D007138 ORTHO05D009148 3.1e-06 58.5 110 34.5
Cpa.g.sc157.22 Carica papaya HOM05D007138 ORTHO05D009148 5.4e-06 57.8 97 35.1


User provided reference genes

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