Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.9e-117 425.2 212 100.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 5.4e-76 288.1 200 71.0
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.3e-74 283.5 204 69.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 6.7e-74 281.2 225 65.3
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.5e-73 280.0 221 64.7
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.9e-73 279.6 211 66.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.5e-73 279.3 199 67.3
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.3e-73 278.9 200 69.5
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.3e-73 278.9 212 66.0
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.3e-73 278.9 204 68.6
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 4.3e-73 278.5 216 65.3
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.3e-73 278.5 213 65.3
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-72 275.8 200 69.0
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-72 275.8 200 69.0
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.8e-72 275.8 200 69.0
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.8e-72 275.8 207 66.7
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.7e-72 275.4 216 66.2
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 3.7e-72 275.4 201 67.7
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.7e-72 275.4 224 63.4
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 6.2e-72 274.6 212 66.5
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.1e-71 273.9 202 67.8
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.1e-71 273.9 223 66.8
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.8e-71 273.1 199 67.8
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.4e-71 272.7 203 67.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.4e-71 272.7 198 67.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.1e-71 272.3 197 69.0
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 5.3e-71 271.6 203 67.0
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.3e-71 271.6 204 67.2
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.3e-71 271.6 198 67.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 5.3e-71 271.6 225 63.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 6.9e-71 271.2 213 63.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 6.9e-71 271.2 228 61.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 9.0e-71 270.8 194 69.6
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 9.0e-71 270.8 208 65.4
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 9.0e-71 270.8 213 63.4
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 9.0e-71 270.8 202 66.8
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.2e-70 270.4 202 67.8
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.2e-70 270.4 200 68.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.2e-70 270.4 208 66.8
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.2e-70 270.4 221 63.3
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.2e-70 270.4 214 66.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.2e-70 270.4 222 64.0
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.5e-70 270.0 195 68.7
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.0e-70 269.6 220 64.1
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.0e-70 269.6 205 65.9
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.0e-70 269.6 230 60.9
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.6e-70 269.2 200 67.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.6e-70 269.2 225 62.7
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 3.4e-70 268.9 225 62.7
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.4e-70 268.9 218 63.3
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.4e-70 268.9 218 63.3
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.4e-70 268.9 225 62.7
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.4e-70 268.9 225 62.7
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.4e-70 268.9 225 62.7
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.4e-70 268.9 215 62.3
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.5e-70 268.5 198 66.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 4.5e-70 268.5 203 66.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 5.8e-70 268.1 212 63.7
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.0e-69 267.3 199 66.3
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.0e-69 267.3 209 66.0
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.3e-69 266.9 200 66.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.3e-69 266.9 228 63.6
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.2e-69 266.2 200 67.5
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.9e-69 265.8 210 63.3
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.9e-69 265.8 224 61.6
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.9e-69 265.0 208 64.4
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 6.5e-69 264.6 197 67.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 6.5e-69 264.6 213 62.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.1e-68 263.8 223 62.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-68 263.8 213 62.9
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.9e-68 263.1 213 64.3
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.9e-68 263.1 206 65.0
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.2e-68 261.9 211 62.1
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 5.5e-68 261.5 194 66.0
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.6e-67 260.0 204 64.2
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.6e-67 260.0 231 60.6
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.6e-67 260.0 210 62.9
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.6e-67 260.0 218 59.2
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.1e-67 259.6 205 62.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 3.5e-67 258.8 210 62.4
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 4.6e-67 258.5 212 63.2
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 4.6e-67 258.5 212 63.2
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.6e-67 258.5 208 63.0
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 6.0e-67 258.1 228 60.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 6.0e-67 258.1 213 60.6
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 6.0e-67 258.1 199 65.3
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 7.9e-67 257.7 203 63.5
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.0e-66 257.3 189 67.2
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.9e-66 255.4 226 60.6
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.9e-65 253.1 201 63.7
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 5.7e-65 251.5 201 63.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 5.7e-65 251.5 201 63.2
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 9.6e-65 250.8 189 67.7
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.8e-64 249.2 198 62.6
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.7e-64 248.8 199 62.8
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.8e-64 248.4 207 60.4
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.1e-63 247.3 195 63.6
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.1e-63 247.3 216 60.6
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.4e-63 246.9 215 60.0
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.8e-63 246.5 198 62.1
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.4e-63 246.1 215 59.1
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.4e-63 246.1 202 61.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 3.1e-63 245.7 215 59.1
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 3.1e-63 245.7 215 59.5
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 3.1e-63 245.7 215 59.5
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 4.1e-63 245.4 197 63.5
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 5.3e-63 245.0 215 59.1
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 6.9e-63 244.6 191 63.9
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.9e-63 244.6 210 60.0
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.0e-62 243.0 200 61.5
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.0e-62 243.0 200 61.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.0e-62 243.0 200 61.5
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.6e-62 242.7 191 63.4
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 7.6e-62 241.1 204 58.8
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-61 240.7 214 58.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.3e-61 240.4 211 59.2
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.9e-61 239.2 216 58.3
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.9e-61 239.2 216 58.3
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.2e-60 235.3 189 61.4
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 4.2e-60 235.3 181 61.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.3e-60 234.2 214 57.0
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.3e-57 225.7 210 57.1
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 7.4e-57 224.6 204 56.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.6e-54 216.1 197 56.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.1e-52 210.7 144 69.4
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.8e-50 203.4 158 63.3
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 5.1e-50 201.8 211 55.0
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 3.3e-49 199.1 158 62.0
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.4e-46 189.1 160 58.8
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 7.7e-46 188.0 229 52.4
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.8e-42 176.8 122 68.9
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 3.9e-42 175.6 123 67.5
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.8e-39 166.8 105 75.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 7.7e-38 161.4 189 48.1
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.2e-35 154.1 205 44.4
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 6.1e-35 151.8 103 68.0
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 8.8e-34 147.9 118 61.9
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.6e-30 137.1 104 62.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 3.0e-18 96.3 62 67.7
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 4.3e-12 75.9 62 64.5
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 1.4e-10 70.9 164 31.1
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.4e-09 66.2 145 31.7
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.4e-09 66.2 145 31.7
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 5.4e-07 58.9 207 28.0
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 7.0e-07 58.5 180 27.8


User provided reference genes

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