Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 8.2e-247 856.7 451 100.0
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.5e-168 596.7 441 71.7
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.3e-164 582.8 442 69.9
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.4e-160 568.9 433 69.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.6e-157 560.1 435 67.1
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 2.7e-157 559.3 452 67.3
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-156 557.0 413 69.5
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.0e-156 555.8 432 69.7
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 6.6e-156 554.7 432 69.4
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 5.6e-155 551.6 432 68.5
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-153 547.0 408 69.1
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-151 540.4 440 65.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.4e-151 538.1 436 65.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.6e-149 533.5 443 63.9
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.7e-149 532.7 439 63.3
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.8e-148 530.0 443 64.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-147 526.9 417 65.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 3.3e-147 525.8 431 65.0
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 7.4e-147 524.6 418 64.8
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 7.4e-147 524.6 444 61.9
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.1e-146 523.1 434 63.1
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 4.8e-146 521.9 414 64.7
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 4.8e-146 521.9 445 62.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.4e-145 520.4 435 63.2
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.8e-145 520.0 440 62.0
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 3.1e-145 519.2 437 63.2
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 3.1e-145 519.2 431 63.8
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 4.0e-145 518.8 436 63.1
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.5e-144 516.9 430 63.3
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-144 516.9 445 62.5
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.4e-144 515.8 445 62.5
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.4e-144 515.8 447 62.4
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.5e-144 515.4 445 62.5
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 4.5e-144 515.4 435 61.8
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 5.8e-144 515.0 447 61.1
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.6e-144 514.6 403 66.0
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 9.9e-144 514.2 416 62.7
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 4.9e-143 511.9 422 64.0
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.9e-143 511.9 409 65.5
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.4e-142 510.4 441 61.5
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.4e-142 510.4 423 63.1
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 3.2e-142 509.2 447 62.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 5.5e-142 508.4 437 61.1
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 9.3e-142 507.7 425 63.8
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 9.3e-142 507.7 431 63.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 9.3e-142 507.7 431 62.9
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.2e-141 507.3 441 61.5
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.1e-141 506.5 424 63.4
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 2.7e-141 506.1 437 61.1
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.7e-141 506.1 411 64.5
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 2.7e-141 506.1 412 65.0
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.5e-141 505.8 416 64.2
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.0e-141 505.0 416 64.2
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 7.9e-141 504.6 409 64.3
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.0e-140 504.2 416 63.9
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.3e-140 503.8 437 61.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.3e-140 503.8 444 61.3
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.8e-140 503.4 437 60.0
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.9e-140 502.3 433 61.4
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.9e-140 502.3 437 60.0
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 5.1e-140 501.9 435 60.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.3e-138 497.3 440 61.1
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.6e-138 496.9 443 59.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.6e-138 496.9 447 60.4
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.8e-137 493.4 435 60.9
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.8e-137 493.4 436 63.1
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.4e-137 493.0 417 61.9
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 6.9e-137 491.5 436 59.6
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.2e-136 490.7 443 59.8
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.2e-136 490.7 438 60.0
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.5e-136 490.3 436 59.4
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.6e-136 489.6 415 62.4
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.4e-136 489.2 466 58.4
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 5.8e-136 488.4 435 59.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 5.8e-136 488.4 436 59.4
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 7.6e-136 488.0 436 59.4
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 7.6e-136 488.0 434 60.6
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.2e-135 486.5 443 60.9
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.2e-135 486.5 436 59.2
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.8e-135 485.7 515 52.8
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 3.8e-135 485.7 440 60.0
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.8e-135 485.7 435 60.0
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 3.2e-134 482.6 445 58.7
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 5.5e-134 481.9 435 60.5
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 7.1e-134 481.5 431 59.9
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 7.1e-134 481.5 435 60.2
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 9.3e-134 481.1 445 59.3
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.1e-133 479.9 433 60.5
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-133 479.6 446 59.4
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.0e-132 477.6 410 59.8
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.8e-132 476.9 422 61.6
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.3e-132 476.5 435 58.2
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.3e-132 476.5 371 66.0
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 3.0e-132 476.1 437 60.0
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 5.1e-132 475.3 435 58.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.5e-131 473.8 474 55.7
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.9e-131 473.4 412 61.9
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 4.3e-131 472.2 434 59.0
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 6.3e-130 468.4 445 58.7
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 8.2e-130 468.0 430 58.1
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.1e-129 467.6 374 66.6
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 4.1e-129 465.7 411 59.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.0e-128 463.4 442 58.1
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.0e-128 463.4 414 60.4
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 2.2e-127 459.9 413 60.0
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 6.5e-127 458.4 439 56.5
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 8.5e-127 458.0 445 56.0
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.4e-126 457.2 445 56.6
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.2e-126 456.1 432 56.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-125 453.0 445 56.6
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 6.7e-124 448.4 422 59.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 9.7e-123 444.5 408 59.8
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 5.9e-120 435.3 434 53.9
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 5.0e-119 432.2 442 55.7
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.8e-116 423.7 387 59.4
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.7e-115 417.9 433 55.0
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.3e-114 417.5 431 53.8
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.8e-114 416.4 431 54.1
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.7e-109 399.1 435 55.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.4e-105 387.5 522 46.4
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 5.9e-104 382.1 313 64.9
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 2.3e-100 370.2 302 64.2
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.3e-100 370.2 429 48.0
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 4.0e-100 369.4 426 50.2
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 2.6e-99 366.7 312 60.9
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.6e-96 357.5 410 48.3
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.5e-94 350.1 345 55.4
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.2e-93 347.8 428 48.6
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 6.1e-93 345.5 380 55.0
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 5.2e-92 342.4 305 60.7
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 3.5e-80 303.1 191 82.2
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 6.6e-71 272.3 247 57.9
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.3e-68 263.8 180 72.8
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.2e-65 253.4 200 65.5
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.1e-65 253.1 418 40.2
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 9.2e-65 251.9 322 46.9
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.5e-62 243.8 179 68.7
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 9.5e-62 241.9 185 67.0
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.8e-60 235.7 192 63.5
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.0e-47 195.3 162 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.2e-43 181.8 139 59.7
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.7e-40 170.6 149 62.4
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.7e-34 151.4 236 41.5
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 1.9e-30 137.9 120 64.2
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 4.5e-27 126.7 116 57.8
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.2e-26 124.4 88 68.2
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 4.9e-26 123.2 81 71.6
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 6.2e-21 106.3 112 50.9
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.1e-17 95.5 203 34.5
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.1e-15 86.7 126 39.7
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.1e-14 85.5 80 56.2
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 9.7e-14 82.4 432 25.0
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.3e-10 72.0 396 23.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.7e-08 64.3 199 26.1
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.0e-07 62.4 192 26.6
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.0e-07 60.8 197 28.4
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 3.9e-07 60.5 49 63.3
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 6.7e-07 59.7 285 23.9


User provided reference genes

Program Settings