Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 2295.8 1208 100.0
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1234.6 1192 59.0
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1229.2 1203 58.8
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1169.8 1193 56.6
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1159.1 1203 56.0
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1142.5 1187 55.8
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1142.1 1196 55.2
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1132.1 1204 54.8
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1124.0 1210 55.0
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1122.8 1217 54.5
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1119.8 1202 54.3
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1119.0 1184 55.3
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1118.6 1193 54.7
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1118.2 1211 54.3
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1116.7 1211 54.2
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1115.1 1208 54.6
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1114.4 1186 55.2
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1112.1 1147 56.5
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1108.6 1186 54.5
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1106.7 1196 55.1
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1105.1 1188 53.9
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1094.3 1180 54.5
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1094.0 1213 53.8
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1092.4 1203 54.0
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1091.3 1207 53.8
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1091.3 1180 54.4
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1087.4 1202 53.7
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1086.6 1202 54.2
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1086.6 1241 53.1
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1085.1 1202 53.4
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1084.7 1184 54.1
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1083.9 1173 54.0
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1076.6 1184 54.0
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1075.8 1210 53.0
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 8.3e-312 1074.7 1184 53.5
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 8.3e-312 1074.3 1160 53.9
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 8.3e-312 1073.9 1142 55.3
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 8.3e-312 1073.5 1214 53.2
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 8.3e-312 1073.5 1174 53.7
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 1.7e-311 1073.2 1142 54.8
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 5.8e-311 1071.2 1185 53.2
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 1.2e-310 1070.1 1182 53.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 8.2e-310 1067.4 1204 53.1
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 8.2e-310 1067.4 1151 54.5
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 1.2e-308 1063.5 1173 52.9
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 3.8e-307 1058.5 1144 54.1
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 8.4e-307 1057.4 1226 51.6
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 8.4e-307 1057.4 1212 52.2
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 8.4e-307 1057.4 1226 51.6
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 1.1e-306 1057.0 1226 51.6
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 1.4e-306 1056.6 1166 52.3
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 4.2e-306 1055.0 1175 52.3
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 9.3e-306 1053.9 1192 52.9
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 2.1e-305 1052.7 1221 51.7
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 2.7e-305 1052.4 1200 52.3
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 2.3e-304 1049.3 1202 52.2
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.1e-303 1047.0 1171 53.3
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 2.5e-303 1045.8 1203 50.7
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 2.8e-302 1042.3 1202 51.7
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 2.4e-301 1039.3 1180 52.7
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.1e-301 1038.9 1199 51.9
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 5.3e-301 1038.1 1186 52.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.3e-301 1038.1 1199 51.9
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 1.2e-300 1036.9 1168 53.0
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 7.7e-300 1034.2 1207 51.1
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 1.0e-299 1033.9 1187 52.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-299 1033.5 1199 51.7
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 2.9e-299 1032.3 1195 51.7
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.2e-298 1028.5 1199 51.6
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 4.6e-297 1025.0 1228 51.9
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 2.0e-295 1019.6 1177 51.7
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 4.3e-295 1018.5 1146 52.7
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 7.4e-295 1017.7 1175 51.7
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 9.7e-295 1017.3 1146 52.6
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 9.7e-295 1017.3 1198 51.6
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 2.8e-294 1015.8 1211 51.1
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 2.8e-294 1015.8 1211 51.1
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-294 1014.6 1154 51.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 3.1e-293 1012.3 1207 50.4
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 3.1e-293 1012.3 1130 51.9
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.0e-292 1009.6 1197 51.5
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.5e-292 1008.4 1202 51.3
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 5.0e-291 1005.0 1159 51.9
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 4.2e-290 1001.9 1183 51.1
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 2.1e-289 999.6 1204 50.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 2.0e-287 993.0 1191 50.5
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 3.1e-285 985.7 1311 47.1
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 5.3e-285 984.9 1216 50.2
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 2.2e-283 979.5 1149 52.0
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 2.2e-283 979.5 1199 49.5
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 4.5e-276 955.3 1189 49.7
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 3.1e-269 932.6 1162 49.1
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 1.6e-268 930.2 1408 43.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 8.3e-262 907.9 1140 48.2
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 9.2e-261 904.4 1082 49.5
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 9.5e-258 894.4 1041 51.2
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 3.6e-257 892.5 1090 50.5
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 4.0e-256 889.0 1179 46.9
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 8.9e-256 887.9 1190 47.6
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 7.5e-255 884.8 1148 46.3
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 2.5e-250 869.8 1179 46.6
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.1e-248 862.8 1231 44.1
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 8.3e-238 828.2 1215 42.7
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.9e-237 827.0 1173 45.3
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 5.8e-231 805.4 986 49.9
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 2.1e-225 786.9 1195 43.8
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 8.1e-225 785.0 809 56.5
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 1.3e-214 751.1 907 50.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 8.1e-209 731.9 769 55.8
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.6e-204 717.6 1155 40.5
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.5e-191 672.9 1145 39.7
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.6e-178 630.6 684 53.2
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 8.2e-177 625.5 721 50.8
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 2.4e-168 597.4 658 54.7
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.5e-166 589.3 651 51.3
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 5.7e-162 576.2 672 50.1
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.3e-158 565.1 619 51.7
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 6.5e-150 536.2 616 49.7
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 2.8e-145 520.8 689 46.2
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.1e-136 492.3 1497 29.3
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 3.6e-132 477.2 575 48.5
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.7e-127 461.1 592 46.5
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.7e-121 440.7 522 48.3
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 6.0e-111 406.8 467 52.5
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.6e-110 403.3 465 52.5
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 6.6e-102 376.7 438 52.5
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 6.2e-84 317.0 377 52.0
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 7.6e-82 310.1 387 51.2
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 4.6e-79 300.8 426 43.9
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 3.0e-70 271.6 371 48.5
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.1e-61 243.0 464 39.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-59 236.1 312 46.8
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.8e-59 235.7 227 58.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-52 212.6 281 47.0
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 5.3e-51 207.6 292 41.4
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.9e-50 204.1 389 40.9
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.7e-49 202.6 252 50.8
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.0e-46 193.4 216 47.7
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 9.4e-40 170.2 210 49.0
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.6e-39 169.5 180 48.9
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 7.0e-35 154.1 165 54.5
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.9e-33 148.7 97 75.3
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.5e-29 134.0 228 38.2
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-28 132.1 214 39.3
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-28 131.0 226 38.1
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-26 126.7 211 38.9
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.9e-26 124.4 134 59.7
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.7e-25 122.9 227 38.8
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.8e-25 121.7 168 46.4
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.2e-23 116.7 168 47.0
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.4e-22 113.2 106 53.8
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-21 109.0 146 40.4
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.5e-21 107.5 134 41.8
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 3.7e-20 105.1 134 41.8
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 8.3e-20 104.0 131 41.2
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.6e-16 91.3 192 31.2
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.6e-16 91.3 73 67.1
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 7.3e-16 90.9 74 66.2
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-15 88.6 120 41.7
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.0e-15 87.4 117 39.3
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.0e-13 82.8 60 70.0
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.9e-11 76.3 45 77.8
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 3.2e-11 75.5 57 70.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 5.4e-11 74.7 144 43.1
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 1.6e-10 73.2 70 62.9
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-08 67.0 172 34.9


User provided reference genes

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