Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.2e-111 405.6 202 100.0
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 7.0e-81 304.3 191 82.2
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.0e-63 247.3 177 69.5
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 7.3e-62 241.1 175 70.9
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.1e-61 239.6 175 68.6
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-59 233.8 177 67.8
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-59 233.4 177 66.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.5e-59 231.1 172 68.6
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.5e-59 231.1 172 68.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 7.5e-59 231.1 190 64.7
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 7.5e-59 231.1 151 75.5
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 9.8e-59 230.7 174 69.5
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 9.8e-59 230.7 176 68.8
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 9.8e-59 230.7 176 67.0
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.3e-58 230.3 151 74.8
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 2.2e-58 229.6 177 66.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 6.4e-58 228.0 170 68.8
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.4e-58 228.0 176 64.8
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-57 226.9 176 64.8
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.4e-57 226.9 173 65.3
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.4e-57 226.1 154 72.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.4e-57 226.1 154 72.1
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.4e-57 226.1 172 65.1
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.1e-57 225.3 151 72.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 7.1e-57 224.6 178 64.0
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 7.1e-57 224.6 162 67.9
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 9.2e-57 224.2 153 70.6
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.2e-56 223.8 172 64.0
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.2e-56 223.8 179 65.4
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 2.1e-56 223.0 177 64.4
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 3.5e-56 222.2 178 64.0
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 3.5e-56 222.2 171 66.7
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.0e-56 221.5 177 63.8
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.0e-55 220.7 175 64.0
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.3e-55 220.3 158 68.4
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-55 220.3 150 74.0
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-55 220.3 156 72.4
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.7e-55 219.9 154 70.1
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.7e-55 219.9 173 63.0
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.3e-55 219.5 177 62.1
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.9e-55 218.8 172 64.5
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 5.1e-55 218.4 178 60.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 5.1e-55 218.4 171 62.0
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 6.6e-55 218.0 176 63.6
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-54 217.2 175 65.1
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.1e-54 217.2 177 62.7
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.9e-54 216.5 187 63.1
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 2.5e-54 216.1 178 63.5
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 2.5e-54 216.1 176 62.5
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.5e-54 216.1 177 62.1
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.3e-54 215.7 176 61.9
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 7.3e-54 214.5 151 69.5
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 7.3e-54 214.5 150 70.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.5e-54 214.2 172 63.4
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.6e-53 213.4 174 62.6
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.6e-53 213.4 174 62.6
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.6e-53 213.4 149 70.5
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.1e-53 213.0 181 61.3
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.8e-53 212.6 151 68.9
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 2.8e-53 212.6 172 62.2
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.6e-53 212.2 171 66.1
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 3.6e-53 212.2 182 59.9
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 4.7e-53 211.8 177 63.8
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 8.1e-53 211.1 178 62.4
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.1e-52 210.7 177 59.9
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.8e-52 209.9 149 67.1
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.8e-52 209.9 152 67.1
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.8e-52 209.9 186 61.3
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.8e-52 209.9 180 62.2
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.3e-52 209.5 177 58.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 3.1e-52 209.1 184 60.3
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.1e-52 209.1 171 60.2
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 3.1e-52 209.1 151 68.9
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 4.0e-52 208.8 175 61.7
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 4.0e-52 208.8 177 59.3
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.0e-52 208.8 177 58.8
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 5.2e-52 208.4 177 58.8
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.2e-52 208.4 171 60.2
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.8e-52 208.0 177 57.1
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 8.9e-52 207.6 172 62.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.5e-51 206.8 176 63.1
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.5e-51 206.8 172 61.0
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 2.0e-51 206.5 173 62.4
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.0e-51 206.5 177 62.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 2.6e-51 206.1 171 61.4
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 3.4e-51 205.7 199 56.8
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 4.4e-51 205.3 172 60.5
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 5.8e-51 204.9 178 61.2
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 7.6e-51 204.5 171 60.8
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 9.9e-51 204.1 178 61.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.9e-51 204.1 176 62.5
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.9e-51 204.1 178 61.8
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.7e-50 203.4 171 61.4
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 2.9e-50 202.6 153 64.7
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 3.7e-50 202.2 153 66.0
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 8.3e-50 201.1 171 60.8
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.4e-49 200.3 170 60.0
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.9e-49 199.9 179 59.2
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.4e-49 199.5 181 58.6
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 9.2e-49 197.6 175 60.0
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 9.2e-49 197.6 150 64.7
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.2e-48 197.2 185 54.1
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 2.7e-48 196.1 169 57.4
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 3.5e-48 195.7 175 58.9
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 3.5e-48 195.7 175 60.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.5e-48 195.7 173 57.8
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.5e-48 195.7 170 60.0
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.6e-48 195.3 175 60.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.3e-47 193.7 176 58.5
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.7e-47 193.4 175 58.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 6.6e-47 191.4 149 61.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 2.5e-46 189.5 176 56.2
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.5e-46 189.5 135 69.6
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.3e-46 188.7 149 63.1
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 7.3e-46 188.0 156 66.0
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.3e-46 188.0 152 65.1
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 2.1e-45 186.4 176 55.7
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.1e-45 186.4 175 56.0
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 6.2e-45 184.9 176 55.7
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 6.2e-45 184.9 176 55.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.4e-44 183.7 176 55.7
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 5.2e-44 181.8 147 60.5
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.7e-42 176.8 175 52.0
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 9.3e-41 171.0 145 62.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.2e-40 170.6 171 56.1
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.3e-39 166.4 136 61.8
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.5e-38 163.7 142 57.0
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.8e-37 159.5 131 61.1
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 7.6e-35 151.4 192 45.8
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.1e-33 147.5 167 48.5
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.7e-26 123.6 104 62.5
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 9.3e-25 117.9 117 53.8
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.6e-24 117.1 117 53.8
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.8e-23 113.6 82 62.2
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 9.6e-22 107.8 83 62.7
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.5e-18 95.1 153 37.9
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.2e-17 92.4 151 37.7
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 4.3e-14 82.4 173 34.1
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.1e-13 80.1 60 66.7
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 4.8e-13 79.0 253 31.2
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.0e-07 61.2 52 59.6


User provided reference genes

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