Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 6.0e-105 384.4 227 100.0
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 7.7e-52 208.0 199 60.3
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 2.9e-51 206.1 209 62.7
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 5.0e-51 205.3 199 58.8
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.1e-50 204.1 203 62.1
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.1e-50 204.1 197 64.0
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.1e-50 204.1 196 66.8
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.9e-50 203.4 197 69.0
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.5e-50 203.0 197 64.0
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.2e-49 200.7 206 61.7
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 3.6e-49 199.1 194 63.4
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 6.1e-49 198.4 200 60.5
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.4e-48 197.2 201 61.2
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.8e-48 196.8 196 61.7
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 3.0e-48 196.1 199 61.3
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 3.9e-48 195.7 197 61.9
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 6.7e-48 194.9 197 62.4
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 2.0e-47 193.4 201 58.7
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 3.3e-47 192.6 212 58.5
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 9.7e-47 191.0 201 59.7
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 1.7e-46 190.3 200 59.0
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.4e-45 187.2 200 59.0
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 2.4e-45 186.4 202 58.9
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 3.1e-45 186.0 203 60.1
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 7.0e-45 184.9 205 58.5
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.2e-44 184.1 203 58.1
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.5e-44 183.7 200 56.0
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.6e-44 183.0 200 56.0
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.5e-44 182.6 198 56.6
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 5.9e-44 181.8 207 57.0
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.7e-44 181.4 200 55.5
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.0e-43 181.0 200 58.0
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.3e-43 180.6 200 55.5
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 1.7e-43 180.3 190 60.0
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 6.5e-43 178.3 206 56.3
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 8.5e-43 177.9 201 54.2
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.5e-42 177.2 208 56.7
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.9e-42 176.8 203 56.2
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 3.2e-42 176.0 197 57.9
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 3.2e-42 176.0 206 55.8
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 4.2e-42 175.6 198 52.0
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.2e-42 174.9 200 56.0
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 7.2e-42 174.9 197 57.9
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 7.2e-42 174.9 206 57.3
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.2e-41 174.1 200 57.0
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.2e-41 174.1 205 55.6
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.6e-41 173.7 206 58.3
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 2.7e-41 172.9 203 55.2
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 4.7e-41 172.2 202 59.4
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.0e-40 171.0 199 56.3
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.0e-40 171.0 206 56.8
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.3e-40 169.9 195 55.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 3.0e-40 169.5 194 62.9
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 3.0e-40 169.5 199 56.8
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 5.2e-40 168.7 197 56.9
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.5e-39 167.2 200 53.5
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 3.3e-39 166.0 193 56.5
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 9.7e-39 164.5 193 55.4
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.3e-38 164.1 205 53.2
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 2.2e-38 163.3 201 53.2
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 2.2e-38 163.3 201 53.2
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 2.2e-38 163.3 201 53.2
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.7e-38 162.5 195 55.4
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.8e-38 162.2 135 70.4
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 4.8e-38 162.2 197 54.8
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 4.8e-38 162.2 201 54.2
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 6.3e-38 161.8 201 52.7
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 6.3e-38 161.8 201 52.7
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 8.2e-38 161.4 205 53.2
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.1e-37 161.0 200 52.5
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.4e-37 160.6 201 52.2
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 2.4e-37 159.8 209 52.2
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 5.3e-37 158.7 200 53.0
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 7.0e-37 158.3 200 58.0
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 7.0e-37 158.3 200 53.0
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.6e-36 156.4 135 68.9
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.6e-36 156.4 205 53.7
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.0e-35 154.5 221 51.1
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.0e-35 154.5 196 54.1
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.0e-35 154.5 138 64.5
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 1.7e-35 153.7 201 52.7
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 3.8e-35 152.5 204 49.5
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 5.0e-35 152.1 207 54.1
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 8.5e-35 151.4 205 53.2
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 8.5e-35 151.4 196 52.0
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.9e-34 150.2 190 54.7
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 4.2e-34 149.1 191 49.7
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 5.5e-34 148.7 195 52.8
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 7.2e-34 148.3 194 55.2
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 7.2e-34 148.3 202 53.0
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.2e-33 147.5 197 51.8
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.6e-33 146.0 198 51.0
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 6.1e-33 145.2 199 49.7
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 3.0e-32 142.9 204 49.0
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-31 141.0 200 49.5
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 2.0e-31 140.2 200 48.5
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.4e-31 139.4 143 62.2
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 5.7e-31 138.7 199 50.3
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 9.8e-31 137.9 201 48.3
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.7e-30 137.1 199 48.7
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.7e-30 137.1 199 48.7
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.2e-30 136.7 176 48.3
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 4.8e-30 135.6 200 48.0
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.8e-29 133.7 190 48.9
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.8e-29 133.7 196 49.0
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 2.7e-28 129.8 200 49.0
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.5e-28 129.4 176 46.0
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 4.5e-28 129.0 196 48.5
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 4.5e-28 129.0 176 45.5
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.3e-27 127.5 204 49.5
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 2.9e-27 126.3 196 53.1
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.8e-27 125.9 196 52.6
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 5.0e-27 125.6 204 48.0
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 4.7e-25 119.0 191 48.2
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 4.7e-25 119.0 167 50.9
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 6.8e-24 115.2 124 51.6
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 9.8e-23 111.3 202 52.0
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.3e-22 110.9 190 40.5
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 7.0e-21 105.1 148 45.9
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.5e-20 102.8 163 47.2
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 5.9e-20 102.1 117 54.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 7.7e-20 101.7 141 44.0
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-19 100.9 163 46.6
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-19 100.9 144 44.4
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 3.4e-15 86.3 105 57.1
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 3.7e-14 82.8 61 90.2
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 4.9e-14 82.4 136 39.0
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 1.4e-13 80.9 117 45.3
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 7.0e-13 78.6 144 38.2
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 1.0e-11 74.7 192 40.6
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 3.0e-11 73.2 113 41.6
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 4.3e-10 69.3 96 41.7
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.1e-09 67.0 130 44.6
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 3.1e-08 63.2 68 54.4
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.2e-07 61.2 135 32.6
CBR_g38886 Chara braunii HOM05D010919 ORTHO05D007026 6.4e-06 55.5 114 37.7


User provided reference genes

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