Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 9.0e-280 966.5 553 100.0
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.0e-178 629.8 549 66.8
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 3.8e-177 625.5 527 65.3
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.4e-176 623.6 555 62.0
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 4.6e-175 618.6 454 69.8
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.7e-174 616.7 531 65.3
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 3.9e-174 615.5 525 63.8
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 6.6e-174 614.8 444 71.6
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.9e-173 613.2 521 65.5
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 5.6e-173 611.7 556 62.9
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 4.8e-172 608.6 527 64.9
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 4.8e-172 608.6 556 61.7
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.1e-171 607.4 509 65.6
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.1e-171 607.4 530 63.6
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.8e-171 606.7 503 64.8
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.8e-171 606.7 555 63.1
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 1.8e-171 606.7 519 64.4
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 2.4e-171 606.3 555 62.5
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 3.1e-171 605.9 545 64.0
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 3.1e-171 605.9 531 63.5
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 3.1e-171 605.9 555 62.2
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 3.1e-171 605.9 525 62.9
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 5.3e-171 605.1 542 63.3
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 6.9e-171 604.7 453 69.5
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 6.9e-171 604.7 519 64.5
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 9.0e-171 604.4 493 66.3
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.2e-170 604.0 438 70.8
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.6e-170 602.8 501 65.7
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 5.8e-170 601.7 460 68.7
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 9.9e-170 600.9 422 71.3
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.3e-169 600.5 506 64.6
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.3e-169 600.5 533 63.0
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.7e-169 600.1 436 70.4
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 1.7e-169 600.1 511 65.6
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 4.9e-169 598.6 516 64.5
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 4.9e-169 598.6 421 72.9
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 6.4e-169 598.2 538 63.2
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.4e-168 597.0 475 67.2
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 3.2e-168 595.9 495 65.5
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 7.1e-168 594.7 498 65.1
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 9.3e-168 594.3 418 72.5
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 2.1e-167 593.2 531 64.2
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 4.6e-167 592.0 520 62.9
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 4.6e-167 592.0 469 66.7
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 7.9e-167 591.3 419 71.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 7.9e-167 591.3 521 62.2
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 1.3e-166 590.5 457 67.0
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 1.7e-166 590.1 509 62.3
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 2.3e-166 589.7 535 63.9
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 2.3e-166 589.7 440 69.5
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 3.0e-166 589.3 544 61.4
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 3.0e-166 589.3 460 66.5
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 3.0e-166 589.3 506 63.8
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 3.9e-166 589.0 491 63.7
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 6.6e-166 588.2 517 61.9
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.9e-165 586.6 552 59.6
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 3.3e-165 585.9 551 60.8
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.6e-164 583.6 533 63.6
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 2.1e-164 583.2 535 62.6
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 3.6e-164 582.4 516 61.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 4.8e-164 582.0 475 65.3
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 4.8e-164 582.0 497 64.0
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.1e-164 581.3 510 63.3
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 8.1e-164 581.3 444 68.0
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.1e-163 580.9 516 63.2
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.4e-163 580.5 428 70.1
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 2.4e-163 579.7 510 63.3
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 3.1e-163 579.3 512 61.7
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 1.2e-162 577.4 550 59.3
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 2.6e-162 576.2 493 62.7
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 3.4e-162 575.9 549 61.4
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 5.8e-162 575.1 564 58.0
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 1.3e-161 573.9 463 66.1
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.2e-161 573.2 532 59.8
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 2.2e-161 573.2 542 63.1
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 8.4e-161 571.2 531 59.5
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 1.3e-158 563.9 543 59.1
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 1.3e-158 563.9 503 62.4
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 3.0e-158 562.8 422 69.7
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 3.0e-158 562.8 422 69.7
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 3.0e-158 562.8 422 69.7
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 5.1e-158 562.0 419 69.7
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 6.7e-158 561.6 422 69.7
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 7.4e-157 558.1 441 67.3
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 9.6e-157 557.8 446 66.1
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 8.1e-156 554.7 419 68.7
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.1e-155 554.3 448 65.8
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.1e-155 554.3 451 63.9
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.1e-155 554.3 537 60.7
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 4.0e-155 552.4 449 65.5
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.0e-154 550.1 429 66.7
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 2.0e-154 550.1 422 69.0
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 2.0e-154 550.1 422 68.0
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 4.5e-154 548.9 460 63.3
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 4.9e-153 545.4 536 59.7
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.2e-151 540.8 554 58.8
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.6e-151 540.4 422 67.5
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 2.3e-150 536.6 565 57.9
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 3.0e-150 536.2 554 58.5
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.9e-149 533.5 501 59.3
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 4.3e-149 532.3 318 81.4
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 2.8e-148 529.6 519 64.0
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.4e-147 527.3 528 57.2
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.0e-145 518.8 513 59.1
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 6.5e-145 518.5 519 57.2
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.5e-143 512.7 512 58.6
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.1e-141 507.7 342 74.3
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 4.3e-141 505.8 456 64.0
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.2e-140 503.4 448 62.3
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 3.7e-140 502.7 529 54.1
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 6.3e-140 501.9 427 63.0
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.0e-138 496.9 346 73.4
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 3.4e-138 496.1 532 54.5
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.6e-135 487.3 555 55.3
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 7.9e-135 485.0 413 64.4
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 1.1e-133 481.1 352 69.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 7.4e-133 478.4 348 75.6
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 6.1e-127 458.8 500 52.6
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.8e-126 454.9 522 52.3
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 2.6e-125 453.4 523 53.0
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.7e-121 440.7 420 58.8
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 7.2e-120 435.3 449 52.6
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 7.2e-120 435.3 334 64.4
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 7.2e-120 435.3 347 64.6
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 1.5e-117 427.6 478 49.4
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 6.3e-116 422.2 510 49.8
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.3e-113 414.5 281 71.5
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 8.5e-113 411.8 350 61.4
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.2e-112 409.8 538 48.5
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 4.7e-111 406.0 418 55.0
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 5.7e-109 399.1 526 47.7
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 5.7e-109 399.1 365 58.9
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.9e-104 384.0 332 59.3
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 3.6e-103 379.8 485 47.2
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 7.5e-101 372.1 355 55.2
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 4.9e-100 369.4 433 47.8
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.0e-98 364.0 599 42.7
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 9.5e-96 355.1 287 63.8
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 4.7e-95 352.8 261 70.5
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 1.6e-90 337.8 698 35.8
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.7e-90 337.0 202 78.2
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 6.2e-87 325.9 402 49.8
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 2.6e-85 320.5 347 49.9
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.9e-84 317.0 309 54.7
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.8e-78 297.7 400 41.0
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 6.6e-73 279.3 549 37.7
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.3e-72 276.9 250 56.4
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 8.9e-70 268.9 535 37.6
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 6.6e-65 252.7 356 44.4
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 3.6e-63 246.9 302 49.7
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 7.1e-43 179.5 152 61.8
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 6.0e-42 176.4 299 42.5
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.0e-41 175.6 282 44.3
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 2.5e-35 154.5 90 78.9
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.9e-27 128.3 136 55.9
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 6.1e-26 123.2 96 65.6
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 1.3e-25 122.1 93 71.0
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 3.0e-25 120.9 154 49.4
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.9e-24 118.2 106 56.6
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 5.5e-19 100.1 283 33.2
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 1.2e-18 99.0 117 49.6
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 1.0e-17 95.9 142 40.1
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 3.3e-16 90.9 117 47.0
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.3e-15 89.0 45 88.9
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 3.1e-14 84.3 46 87.0
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 3.1e-14 84.3 60 68.3
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 5.9e-13 80.1 62 66.1
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 5.0e-12 77.0 258 28.3
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.1e-08 65.9 37 83.8
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 2.6e-08 64.7 51 58.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.6e-08 64.7 199 24.1
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.2e-07 61.6 210 23.8
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 3.7e-07 60.8 31 90.3
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 3.7e-07 60.8 31 90.3


User provided reference genes

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