Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 1.1e-270 936.0 463 100.0
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 4.3e-134 482.3 459 53.2
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 2.4e-129 466.5 459 52.9
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 9.0e-124 448.0 449 53.9
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 1.3e-122 444.1 442 52.7
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.9e-121 440.3 458 51.7
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 3.2e-121 439.5 470 49.6
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 7.9e-120 434.9 465 50.3
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 7.9e-120 434.9 464 48.5
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 1.0e-119 434.5 459 49.9
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 3.9e-119 432.6 476 49.8
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 5.1e-119 432.2 480 49.2
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.9e-118 430.3 472 49.8
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 9.6e-118 427.9 464 49.4
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 9.6e-118 427.9 468 50.2
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 1.6e-117 427.2 462 48.7
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 2.6e-115 419.9 457 49.7
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 7.6e-115 418.3 462 46.8
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.0e-114 417.9 463 49.2
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 2.2e-114 416.8 470 49.1
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 1.9e-113 413.7 459 47.3
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 2.5e-113 413.3 420 50.2
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 1.6e-112 410.6 475 46.9
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 2.1e-112 410.2 473 45.7
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 2.1e-112 410.2 475 46.7
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 2.7e-112 409.8 458 49.6
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 6.0e-112 408.7 470 46.4
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 1.0e-111 407.9 467 46.3
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 1.3e-111 407.5 473 47.1
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 2.3e-111 406.8 458 47.6
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 8.7e-111 404.8 464 47.4
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 1.5e-110 404.1 462 46.8
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 1.5e-110 404.1 467 45.8
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.5e-110 404.1 475 46.7
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.5e-110 404.1 461 46.6
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 1.9e-110 403.7 467 46.0
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.9e-110 403.7 462 47.4
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 1.9e-110 403.7 462 46.3
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 3.3e-110 402.9 466 46.1
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 4.3e-110 402.5 462 46.3
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 7.4e-110 401.7 465 45.8
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.3e-109 401.0 461 46.4
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 1.3e-109 401.0 473 46.1
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 1.3e-109 401.0 462 46.5
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 1.6e-109 400.6 462 46.1
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 1.6e-109 400.6 455 47.5
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 2.8e-109 399.8 471 46.5
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 2.8e-109 399.8 462 47.0
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 3.7e-109 399.4 462 46.1
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 4.8e-109 399.1 460 45.9
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 4.8e-109 399.1 472 46.0
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 4.8e-109 399.1 440 49.3
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 6.3e-109 398.7 463 47.1
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 8.2e-109 398.3 458 45.2
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 1.4e-108 397.5 454 47.4
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 1.4e-108 397.5 469 45.4
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.8e-108 397.1 476 44.7
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 3.1e-108 396.4 464 47.0
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 3.1e-108 396.4 421 50.4
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 6.9e-108 395.2 443 47.6
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 6.9e-108 395.2 457 47.3
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 6.9e-108 395.2 464 47.2
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 9.0e-108 394.8 471 45.6
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 9.0e-108 394.8 468 45.9
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 9.0e-108 394.8 427 50.6
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 1.2e-107 394.4 463 46.2
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 1.5e-107 394.0 471 45.6
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 1.5e-107 394.0 493 45.0
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 1.5e-107 394.0 470 47.2
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 1.5e-107 394.0 470 45.3
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 2.0e-107 393.7 462 47.0
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 2.0e-107 393.7 464 46.6
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 4.5e-107 392.5 437 49.9
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 5.9e-107 392.1 465 44.9
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 5.9e-107 392.1 486 45.7
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.0e-106 391.3 442 47.3
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 1.3e-106 391.0 459 47.7
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 2.2e-106 390.2 456 45.8
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 2.2e-106 390.2 470 47.2
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 3.8e-106 389.4 470 46.0
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 6.5e-106 388.7 464 45.0
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 1.1e-105 387.9 467 45.8
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.9e-105 387.1 460 46.7
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 2.5e-105 386.7 466 46.6
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 5.5e-105 385.6 456 46.7
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 2.7e-104 383.3 449 45.7
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 3.6e-104 382.9 447 46.5
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 3.6e-104 382.9 472 43.2
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 1.3e-103 380.9 473 45.0
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 3.0e-103 379.8 371 53.9
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 6.7e-103 378.6 466 44.2
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 1.1e-102 377.9 459 46.2
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 1.5e-102 377.5 462 44.4
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 1.5e-102 377.5 466 44.6
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 2.5e-102 376.7 444 46.8
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 1.3e-101 374.4 466 45.1
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 2.8e-101 373.2 461 43.8
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 4.8e-101 372.5 473 44.0
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 4.8e-101 372.5 459 44.4
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 1.1e-100 371.3 470 43.0
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 1.1e-100 371.3 468 43.2
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 3.1e-100 369.8 426 47.2
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 3.1e-100 369.8 445 44.0
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 2.6e-99 366.7 466 43.1
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 5.9e-99 365.5 456 43.6
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 3.8e-98 362.8 450 43.6
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 6.5e-98 362.1 468 42.1
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 1.4e-97 360.9 456 44.1
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 2.5e-97 360.1 452 45.8
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 4.2e-97 359.4 378 47.9
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 4.2e-97 359.4 467 42.8
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 5.5e-97 359.0 447 44.7
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 2.1e-96 357.1 474 42.0
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.7e-96 356.7 375 47.7
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 3.6e-96 356.3 458 43.4
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 4.6e-96 355.9 462 44.8
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 4.6e-96 355.9 460 43.7
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 3.9e-95 352.8 358 49.7
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 5.1e-95 352.4 455 44.0
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 6.7e-95 352.1 367 49.3
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 8.8e-95 351.7 456 44.7
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.0e-94 350.5 367 49.0
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 5.7e-94 349.0 461 41.0
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.8e-93 346.7 468 40.8
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 3.7e-93 346.3 360 50.0
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 4.1e-92 342.8 444 44.4
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 2.6e-91 340.1 392 46.4
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 7.9e-88 328.6 361 47.1
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 1.8e-87 327.4 390 45.1
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.0e-86 323.9 315 51.1
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 3.1e-84 316.6 360 46.4
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 2.0e-83 313.9 438 41.3
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.3e-79 300.4 334 47.0
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 6.7e-79 298.9 337 47.8
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 1.5e-78 297.7 299 49.5
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 2.0e-78 297.4 456 37.9
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 1.2e-75 288.1 422 39.6
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 3.2e-73 280.0 444 38.1
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 2.7e-67 260.4 375 41.6
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.0e-66 258.5 291 45.7
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 2.5e-65 253.8 471 33.8
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 1.2e-64 251.5 362 41.2
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 4.0e-55 219.9 270 46.3
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 5.7e-54 216.1 256 48.4
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 6.6e-42 176.0 353 30.3
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 6.8e-39 166.0 151 54.3
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 4.4e-38 163.3 206 42.7
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.6e-30 137.5 162 44.4
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 6.4e-29 132.9 197 37.6
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 5.4e-28 129.8 358 31.0
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 2.8e-24 117.5 297 31.3
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 2.8e-24 117.5 111 52.3
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 2.6e-22 110.9 492 25.4
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 3.9e-18 97.1 167 34.7
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 2.1e-16 91.3 82 54.9
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 2.4e-12 77.8 153 35.9
CAN.G710.6 Capsicum annuum HOM05D000394 ORTHO05D000299 4.0e-07 60.5 193 28.5
Zm00001eb292580 Zea mays HOM05D004273 ORTHO05D005041 9.0e-07 59.3 41 65.9


User provided reference genes

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