Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 5.5e-118 427.6 203 100.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 2.1e-101 372.5 202 90.1
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 4.0e-100 368.2 203 88.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 5.7e-99 364.4 202 87.6
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.1e-97 360.1 198 88.4
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 2.4e-97 359.0 199 88.4
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.3e-95 353.2 198 87.4
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.3e-95 352.4 198 86.9
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 2.9e-95 352.1 202 84.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.9e-94 349.4 199 85.9
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 1.6e-93 346.3 199 85.4
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-93 345.9 190 88.4
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-93 345.9 190 88.4
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-93 345.9 190 88.4
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.8e-93 345.5 190 87.9
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.8e-93 345.5 190 87.9
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.8e-93 345.5 190 87.9
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.0e-92 343.6 196 86.2
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.3e-92 342.4 189 86.8
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.0e-91 339.3 198 84.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.0e-91 339.3 188 86.7
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.0e-91 339.3 188 86.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 5.7e-91 337.8 187 87.2
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.9e-90 334.7 189 84.7
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.4e-89 332.4 199 81.9
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.2e-89 332.0 199 81.9
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.2e-89 332.0 199 81.9
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-88 329.7 189 83.6
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.5e-88 328.6 184 84.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.1e-86 323.6 189 82.0
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 4.3e-86 321.6 188 83.5
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 4.3e-86 321.6 188 83.5
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 4.3e-86 321.6 188 83.5
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 7.3e-86 320.9 196 81.6
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 7.3e-86 320.9 196 81.6
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.8e-85 318.9 189 81.5
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.8e-85 318.9 203 79.8
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.0e-84 317.0 190 80.5
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-84 315.8 176 88.6
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 5.8e-83 311.2 169 88.2
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.7e-82 309.7 188 81.9
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 8.3e-82 307.4 199 78.4
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.1e-81 307.0 199 78.4
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.1e-81 305.1 188 79.8
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 5.4e-81 304.7 165 87.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.3e-78 295.4 189 75.1
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 2.9e-74 282.3 148 90.5
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-73 280.4 149 89.3
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-73 280.4 149 89.3
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.1e-73 280.4 170 80.6
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.1e-73 280.4 164 83.5
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.4e-73 279.3 148 90.5
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 4.6e-72 275.0 166 81.9
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 3.3e-70 268.9 151 86.1
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.3e-70 268.5 149 86.6
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 4.0e-68 261.9 147 83.7
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.6e-67 259.2 158 80.4
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 6.0e-64 248.1 124 91.9
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.6e-61 240.0 139 85.6
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 4.0e-60 235.3 130 83.8
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 9.9e-59 230.7 126 86.5
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.3e-58 230.3 171 69.0
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.8e-58 228.8 197 64.0
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 2.4e-57 226.1 205 62.0
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 2.4e-57 226.1 205 62.0
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-54 216.1 139 78.4
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 3.3e-54 215.7 149 73.8
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.8e-53 211.8 141 74.5
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.9e-52 208.0 109 85.3
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 4.9e-50 201.8 114 83.3
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 9.3e-49 197.6 111 84.7
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-38 164.1 90 84.4
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 7.4e-30 134.8 131 56.5
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 2.2e-26 123.2 72 86.1
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-25 120.2 91 64.8
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 8.7e-23 111.3 67 80.6
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-20 104.0 109 53.2
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.0e-18 95.5 53 81.1
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-16 90.5 63 69.8
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-16 90.1 202 33.7
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 7.9e-16 88.2 51 76.5
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 7.4e-14 81.6 50 78.0
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 5.3e-12 75.5 78 50.0
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 9.1e-12 74.7 59 66.1
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 3.8e-10 69.3 55 60.0
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.8e-07 60.5 33 87.9
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 5.1e-07 58.9 40 75.0
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 2.6e-06 56.6 40 67.5


User provided reference genes

Program Settings