Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 3.2e-164 581.6 285 100.0
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 6.8e-82 308.1 301 58.8
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 5.8e-81 305.1 298 59.1
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 2.1e-78 296.6 295 56.9
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 3.0e-77 292.7 312 54.8
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 1.1e-76 290.8 310 57.1
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 2.1e-75 286.6 302 56.3
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 2.8e-75 286.2 299 54.8
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 6.2e-75 285.0 299 53.5
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 1.1e-74 284.3 277 55.6
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 2.4e-74 283.1 292 54.5
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 6.9e-74 281.6 316 51.3
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 1.5e-73 280.4 300 55.7
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.5e-73 280.4 298 54.7
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 2.0e-73 280.0 313 51.1
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 2.6e-73 279.6 296 54.4
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 3.4e-73 279.3 299 54.2
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 7.6e-73 278.1 282 54.6
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 1.3e-72 277.3 303 54.5
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.7e-72 276.9 299 53.5
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 2.2e-72 276.6 286 53.1
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 2.2e-72 276.6 294 56.5
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 4.9e-72 275.4 310 52.6
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 6.4e-72 275.0 336 52.1
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 8.4e-72 274.6 311 52.4
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 3.2e-71 272.7 312 52.6
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 7.1e-71 271.6 281 55.9
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 1.2e-70 270.8 298 55.0
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 1.2e-70 270.8 276 56.9
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 3.5e-70 269.2 302 52.3
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 1.0e-69 267.7 310 51.0
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 1.3e-69 267.3 293 54.3
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 1.7e-69 266.9 299 50.5
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 1.7e-69 266.9 293 52.2
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 2.3e-69 266.5 288 54.2
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 2.3e-69 266.5 298 53.0
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 3.9e-69 265.8 293 52.2
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 5.1e-69 265.4 310 50.6
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 6.6e-69 265.0 284 53.2
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 8.7e-69 264.6 312 51.9
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 8.7e-69 264.6 290 53.4
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 1.5e-68 263.8 293 51.9
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 1.9e-68 263.5 283 52.3
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 3.3e-68 262.7 276 55.1
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 5.6e-68 261.9 335 49.9
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 7.3e-68 261.5 298 51.0
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 7.3e-68 261.5 298 51.0
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 1.3e-67 260.8 299 54.5
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 1.6e-67 260.4 296 51.7
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.1e-67 260.0 298 50.7
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.1e-67 260.0 299 50.8
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.1e-67 260.0 299 50.8
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 3.6e-67 259.2 319 48.6
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 6.2e-67 258.5 278 50.7
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 6.2e-67 258.5 297 52.9
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 1.8e-66 256.9 298 50.3
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 3.1e-66 256.1 286 53.5
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 1.2e-65 254.2 299 50.5
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.0e-65 253.4 281 50.5
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 2.6e-65 253.1 236 60.6
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 9.9e-65 251.1 282 51.8
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 1.7e-64 250.4 307 48.5
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 3.8e-64 249.2 285 50.9
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 4.9e-64 248.8 315 46.3
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 1.4e-63 247.3 281 49.5
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 1.4e-63 247.3 291 51.5
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 1.4e-63 247.3 291 49.1
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 1.9e-63 246.9 285 50.2
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.2e-63 246.1 291 48.5
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 5.4e-63 245.4 281 49.5
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 1.2e-62 244.2 293 52.2
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 2.7e-62 243.0 132 83.3
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.5e-62 242.7 291 49.8
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.3e-61 240.0 284 49.6
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 2.3e-61 240.0 291 47.4
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 3.9e-61 239.2 263 51.7
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 3.9e-61 239.2 328 44.5
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 6.7e-61 238.4 335 43.6
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 1.1e-60 237.7 145 76.6
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 1.5e-60 237.3 278 51.1
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 7.4e-60 235.0 284 47.5
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 1.6e-59 233.8 299 48.8
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 8.1e-59 231.5 266 51.9
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.6e-57 226.5 307 46.9
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 3.4e-57 226.1 278 47.8
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 6.4e-56 221.9 125 81.6
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 3.5e-54 216.1 303 47.2
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.6e-51 207.2 109 84.4
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 4.8e-51 205.7 300 44.0
ATR0582G220 Amborella trichopoda HOM05D000182 ORTHO05D000112 9.0e-50 201.4 127 81.1
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 9.0e-50 201.4 111 82.9
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 3.4e-49 199.5 275 44.0
ATR0629G084 Amborella trichopoda HOM05D000182 ORTHO05D007352 4.5e-49 199.1 115 86.1
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 1.3e-48 197.6 109 84.4
ATR0752G168 Amborella trichopoda HOM05D000182 ORTHO05D007352 2.5e-47 193.4 127 80.3
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 1.8e-45 187.2 128 68.0
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.9e-44 183.7 148 62.2
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 7.4e-44 181.8 293 42.0
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 1.6e-43 180.6 98 86.7
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 5.3e-42 175.6 98 83.7
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 6.9e-42 175.3 261 42.9
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 9.0e-42 174.9 124 63.7
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 6.5e-40 168.7 94 83.0
ATR1132G091 Amborella trichopoda HOM05D000182 ORTHO05D007352 4.2e-39 166.0 101 84.2
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 7.9e-38 161.8 124 59.7
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 1.7e-35 154.1 98 73.5
ATR0681G110 Amborella trichopoda HOM05D000182 ORTHO05D007352 4.1e-34 149.4 85 83.5
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 5.3e-34 149.1 98 72.4
ATR0743G189 Amborella trichopoda HOM05D000182 ORTHO05D007352 9.1e-34 148.3 83 84.3
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 2.0e-33 147.1 121 62.0
ATR0807G084 Amborella trichopoda HOM05D000182 ORTHO05D007352 1.0e-29 134.8 88 76.1
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 4.5e-25 119.4 214 43.0
ATR0585G031 Amborella trichopoda HOM05D000182 ORTHO05D007352 3.6e-22 109.8 72 80.6
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 8.8e-21 105.1 200 39.5
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 2.6e-17 93.6 210 38.1
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 4.7e-14 82.8 193 33.2
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 1.0e-13 81.6 233 33.5
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 2.3e-13 80.5 60 63.3
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 3.0e-13 80.1 60 63.3
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 3.0e-13 80.1 60 63.3
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 3.0e-13 80.1 60 63.3
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 4.0e-13 79.7 82 53.7
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 8.8e-13 78.6 41 87.8
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 6.5e-08 62.4 44 61.4
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 5.5e-07 59.3 177 31.6
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 1.2e-06 58.2 127 37.0
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.6e-06 57.8 175 30.9


User provided reference genes

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