Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 7.1e-184 647.1 327 100.0
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.2e-93 347.4 283 59.0
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 2.6e-93 346.3 301 57.1
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 4.4e-93 345.5 302 57.9
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.6e-90 335.5 298 55.7
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.0e-90 335.1 280 57.9
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.0e-89 334.3 302 55.3
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.3e-89 333.2 292 56.8
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.0e-89 332.8 277 58.5
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.0e-89 332.8 280 57.1
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.0e-89 332.8 298 55.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.0e-89 332.8 298 55.7
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 5.1e-89 332.0 283 55.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 5.1e-89 332.0 283 55.5
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.6e-89 331.6 283 55.8
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-88 330.9 283 55.5
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.5e-88 330.5 297 54.2
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.5e-88 330.5 283 55.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.5e-88 330.5 280 56.4
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.5e-88 329.7 294 54.1
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.5e-88 329.7 277 57.4
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.5e-88 329.7 289 56.1
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-88 329.3 294 55.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.3e-88 329.3 298 54.7
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.6e-88 328.6 294 55.8
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 9.6e-88 327.8 285 55.8
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-87 327.4 298 55.4
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.8e-87 326.2 297 55.6
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.8e-87 326.2 294 55.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 8.1e-87 324.7 280 57.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-86 324.3 298 53.7
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.1e-86 324.3 299 54.2
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.4e-86 323.9 283 54.1
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.8e-86 323.6 298 55.0
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.8e-86 323.6 301 52.8
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 3.1e-86 322.8 283 56.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 3.1e-86 322.8 283 55.5
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 4.0e-86 322.4 298 54.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 4.0e-86 322.4 290 56.2
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 4.0e-86 322.4 290 56.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 5.3e-86 322.0 301 52.2
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.9e-86 321.6 278 57.9
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 6.9e-86 321.6 302 52.0
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 9.0e-86 321.2 299 54.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.2e-85 320.9 292 53.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.5e-85 320.5 281 56.2
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.0e-85 320.1 300 52.3
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.0e-85 320.1 292 54.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.0e-85 320.1 292 54.1
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.0e-85 320.1 283 54.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.4e-85 319.3 239 63.6
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 7.6e-85 318.2 294 55.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 9.9e-85 317.8 292 53.8
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 9.9e-85 317.8 277 56.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 9.9e-85 317.8 281 55.9
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.3e-84 317.4 296 52.0
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.7e-84 317.0 280 53.9
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.7e-84 317.0 283 54.8
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.9e-84 316.2 292 53.4
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.8e-84 315.8 294 53.4
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 3.8e-84 315.8 296 52.4
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 6.4e-84 315.1 277 54.9
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 6.4e-84 315.1 299 52.5
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.4e-84 315.1 297 53.2
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.1e-83 314.3 294 52.7
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.9e-83 313.5 281 54.1
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.9e-83 313.5 274 55.8
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.9e-83 313.5 294 53.4
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.4e-83 313.2 319 48.9
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.2e-83 312.8 293 51.2
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 5.4e-83 312.0 283 54.1
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 5.4e-83 312.0 283 54.8
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 5.4e-83 312.0 286 53.5
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 7.1e-83 311.6 281 53.7
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 9.3e-83 311.2 301 51.2
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-82 310.8 281 53.4
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.6e-82 310.5 301 50.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.1e-82 310.1 298 53.7
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.7e-82 309.7 286 52.8
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.7e-82 309.7 301 53.5
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.7e-82 309.7 295 52.9
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 3.5e-82 309.3 299 50.8
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 4.6e-82 308.9 299 50.5
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.0e-82 308.5 288 54.2
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 7.8e-82 308.1 307 51.5
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.0e-81 307.8 296 52.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.3e-81 307.4 266 56.4
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.7e-81 307.0 301 52.5
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.7e-81 307.0 295 51.9
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.7e-81 307.0 312 49.7
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.3e-81 306.6 293 50.5
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.3e-81 306.6 299 52.8
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.0e-81 306.2 295 50.2
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 5.1e-81 305.4 286 52.1
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 8.7e-81 304.7 290 51.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 8.7e-81 304.7 302 50.7
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-80 304.3 277 53.4
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-80 304.3 280 54.6
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.9e-80 303.5 295 49.8
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.9e-80 303.5 295 49.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.5e-80 303.1 297 51.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 3.3e-80 302.8 280 51.4
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 3.3e-80 302.8 283 51.6
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 7.3e-80 301.6 279 51.6
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 7.3e-80 301.6 280 52.5
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 9.6e-80 301.2 295 49.2
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.1e-79 300.1 280 50.7
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.8e-79 299.7 293 51.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 3.6e-79 299.3 277 50.9
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 3.6e-79 299.3 295 49.2
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.6e-79 299.3 288 53.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 4.8e-79 298.9 295 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 6.2e-79 298.5 298 51.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 6.2e-79 298.5 295 49.2
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 8.1e-79 298.1 295 51.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.1e-78 297.7 295 49.2
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-78 297.4 280 53.6
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-78 297.4 299 51.5
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.8e-78 297.0 269 53.5
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.8e-78 297.0 280 54.6
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 3.1e-78 296.2 321 47.4
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.0e-78 295.8 288 52.1
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.3e-78 295.4 243 57.6
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.3e-78 295.4 282 51.4
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 6.9e-78 295.0 262 55.3
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 9.0e-78 294.7 332 46.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-77 294.3 261 57.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 2.6e-77 293.1 296 50.3
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 5.8e-77 292.0 254 55.9
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.2e-76 290.0 282 52.1
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 7.9e-74 281.6 282 53.5
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 4.3e-72 275.8 265 51.3
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 7.4e-72 275.0 282 51.8
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.6e-71 273.9 264 54.5
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.4e-70 270.8 233 55.4
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 5.3e-70 268.9 285 50.2
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 8.4e-68 261.5 298 45.6
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.0e-62 242.7 222 54.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.0e-61 240.4 283 43.8
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 2.5e-59 233.4 310 41.3
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 4.2e-59 232.6 310 41.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.3e-57 226.9 270 45.2
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.8e-55 219.9 218 50.9
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 9.0e-54 214.9 257 42.8
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.8e-47 193.4 185 50.3
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.2e-45 188.0 210 47.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.4e-45 186.4 292 38.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.3e-44 184.5 294 38.1
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 5.5e-43 179.1 187 48.1
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.7e-42 176.8 171 52.0
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-42 176.4 195 46.7
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-41 174.5 167 53.9
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.5e-40 171.0 151 54.3
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.8e-39 166.8 300 37.0
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 2.6e-37 160.2 277 34.7
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.3e-33 147.1 130 53.1
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 2.0e-32 144.1 259 32.0
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.4e-30 137.1 154 47.4
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 1.8e-22 110.9 208 34.6
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 3.5e-21 106.7 291 27.8
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 7.7e-21 105.5 279 28.0
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.2e-18 98.2 104 48.1
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 3.4e-16 90.1 103 47.6
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.5e-16 89.0 76 59.2
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 2.5e-11 73.9 129 38.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.1e-10 70.9 63 49.2


User provided reference genes

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