Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 0.0e+00 3560.8 1785 100.0
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.7e-261 906.7 1960 36.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 5.7e-251 872.5 1891 35.7
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.5e-214 751.5 1854 32.7
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 1.2e-208 731.9 1808 32.1
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 6.6e-207 726.1 1852 32.1
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 1.1e-206 725.3 1781 32.2
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.5e-206 724.9 1859 31.7
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.4e-204 718.4 1886 32.0
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 4.9e-202 709.9 1867 31.3
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 5.6e-198 696.4 1858 31.2
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 3.6e-197 693.7 1856 31.4
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 2.3e-196 691.0 1654 32.7
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 2.6e-195 687.6 1861 31.4
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 2.6e-195 687.6 1859 30.9
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 2.7e-192 677.6 1880 31.6
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.3e-191 675.2 1961 30.8
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.1e-190 672.2 1880 32.3
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.1e-188 665.6 1741 31.7
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 5.2e-188 663.3 1841 31.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.8e-187 659.8 1876 30.0
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 7.6e-187 659.4 1851 30.3
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.4e-186 656.0 1876 29.9
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 7.1e-185 652.9 1877 30.0
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.6e-184 651.7 1881 29.9
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 2.1e-184 651.4 1326 35.0
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.7e-184 651.0 1329 34.2
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.8e-184 649.4 1883 29.6
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.7e-183 648.3 1853 30.7
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 3.0e-183 647.5 1323 34.5
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.1e-182 645.6 1857 30.5
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 2.9e-178 630.9 1342 33.3
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.9e-177 628.2 1856 31.3
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 5.4e-177 626.7 1334 34.3
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.8e-175 621.7 1613 31.9
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 6.7e-175 619.8 1858 30.0
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 3.3e-174 617.5 1869 29.7
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.3e-173 615.5 1827 30.0
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 2.8e-173 614.4 1877 30.1
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 8.1e-173 612.8 1299 32.9
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 1.4e-172 612.1 1821 29.9
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.4e-172 611.3 1866 30.1
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 6.9e-172 609.8 1336 34.2
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.5e-171 608.6 1355 33.4
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.5e-171 608.6 1243 33.1
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.2e-170 604.7 1878 30.0
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 3.8e-170 604.0 1851 29.7
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 3.5e-168 597.4 1426 31.6
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 3.5e-168 597.4 1426 31.6
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 3.0e-167 594.3 1835 29.2
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 3.9e-167 594.0 1285 33.4
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.1e-166 592.4 2112 28.8
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 5.6e-166 590.1 1328 32.1
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.6e-165 588.6 1345 32.3
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.1e-165 588.2 1869 29.1
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.4e-164 584.7 1339 32.6
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.4e-164 584.7 1850 29.1
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 6.9e-164 583.2 1829 29.3
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 2.5e-161 574.7 1318 31.9
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 7.1e-161 573.2 1329 32.7
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 7.1e-161 573.2 1328 31.3
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 9.3e-161 572.8 1846 30.1
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 7.9e-160 569.7 1849 29.0
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 3.0e-159 567.8 1885 28.3
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 5.1e-159 567.0 1857 28.2
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 1.5e-158 565.5 1909 27.9
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.5e-158 565.5 1318 31.7
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.2e-155 555.8 1842 28.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 6.5e-154 550.1 1325 31.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 2.3e-151 541.6 856 38.8
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.9e-150 538.5 1884 28.3
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 9.7e-150 536.2 1294 31.6
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.4e-148 532.3 1803 29.2
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 5.9e-147 526.9 1322 31.3
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 5.0e-146 523.9 857 37.0
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 6.5e-146 523.5 840 38.5
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 9.4e-145 519.6 1791 28.6
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 8.2e-141 506.5 1326 31.0
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 8.2e-141 506.5 1811 28.3
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.5e-139 502.3 686 42.4
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 7.7e-139 500.0 636 43.2
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.9e-137 495.4 1308 30.7
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 6.1e-136 490.3 1293 30.9
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 1.8e-135 488.8 1299 30.8
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 8.8e-135 486.5 1808 27.8
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.7e-133 482.3 1312 30.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.7e-133 481.1 766 37.5
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 6.3e-133 480.3 1300 29.8
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.8e-132 478.8 1409 30.0
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 3.1e-132 478.0 660 40.5
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 4.5e-131 474.2 1308 30.2
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 3.8e-130 471.1 1395 29.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.6e-123 449.1 1599 28.1
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.0e-119 436.4 1391 28.0
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.5e-113 416.0 660 37.9
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 5.7e-110 404.1 1306 27.9
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 7.3e-89 334.0 535 37.0
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 9.5e-89 333.6 912 29.3
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 8.9e-87 327.0 928 29.8
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.2e-84 317.0 409 41.6
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.9e-76 292.7 455 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 3.2e-76 292.0 844 29.4
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 1.7e-74 286.2 832 29.2
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 6.9e-63 247.7 1248 26.4
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 1.0e-58 233.8 468 34.6
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 3.0e-50 205.7 1298 24.8
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 1.6e-40 173.3 1158 23.7
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.5e-38 166.8 769 26.3
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 3.8e-37 162.2 640 25.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 3.3e-33 149.1 602 26.2
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.3e-32 147.1 92 80.4
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.8e-26 126.7 139 48.2
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 5.7e-17 95.1 720 24.3
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 4.1e-15 89.0 130 33.1
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.2e-14 87.4 303 29.0
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 2.2e-13 83.2 90 50.0
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.7e-11 76.3 582 25.6
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 2.8e-08 66.2 78 47.4
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 1.6e-06 60.5 51 47.1


User provided reference genes

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