Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 3.2e-185 651.7 363 100.0
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.3e-109 400.6 373 63.5
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.3e-109 400.6 373 62.7
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.1e-103 380.9 374 60.7
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 2.6e-102 376.3 372 61.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.4e-100 370.5 366 61.2
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.4e-100 370.5 366 61.2
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.4e-100 370.5 375 58.9
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 1.6e-99 367.1 366 59.6
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 3.5e-99 365.9 374 58.0
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.6e-98 361.7 365 58.6
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 6.6e-98 361.7 363 59.0
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 8.7e-98 361.3 358 60.6
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 7.3e-97 358.2 361 59.6
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.6e-96 357.1 372 57.8
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-96 356.3 365 58.1
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 4.8e-96 355.5 368 58.2
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 6.2e-96 355.1 365 57.3
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.1e-96 354.8 365 58.4
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.1e-95 354.4 377 57.3
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 9.0e-95 351.3 371 56.3
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.2e-94 350.9 375 56.8
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.5e-94 350.5 371 57.7
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.6e-94 349.7 391 56.0
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 9.9e-94 347.8 363 57.3
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 9.9e-94 347.8 363 57.0
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.7e-93 347.1 364 58.5
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.9e-93 346.3 372 55.1
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.9e-93 346.3 342 61.7
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 2.9e-93 346.3 368 57.9
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 3.8e-93 345.9 364 56.9
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.1e-92 344.4 371 56.1
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.1e-92 344.4 357 57.4
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.4e-92 344.0 367 56.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.4e-92 344.0 369 56.1
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.9e-92 343.6 373 55.5
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.4e-92 343.2 332 61.1
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.4e-92 343.2 375 56.3
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 2.4e-92 343.2 368 56.2
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 3.2e-92 342.8 332 60.8
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 4.2e-92 342.4 362 57.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 5.4e-92 342.0 357 57.4
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 7.1e-92 341.7 365 54.5
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.6e-91 340.5 356 56.7
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.1e-91 340.1 384 54.4
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 2.7e-91 339.7 364 55.5
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.7e-91 339.7 374 54.5
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.7e-91 339.7 367 56.4
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.7e-91 339.7 367 54.8
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.0e-91 338.6 372 55.1
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 7.9e-91 338.2 373 55.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.3e-90 337.4 363 55.9
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.8e-90 337.0 359 54.9
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 2.3e-90 336.7 357 55.5
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 3.0e-90 336.3 359 55.4
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 3.9e-90 335.9 356 54.5
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 5.1e-90 335.5 422 51.7
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 6.7e-90 335.1 378 54.8
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 8.7e-90 334.7 369 56.1
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 8.7e-90 334.7 359 55.4
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.5e-89 334.0 366 55.5
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.9e-89 333.6 360 56.9
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.5e-89 333.2 374 53.5
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 3.3e-89 332.8 356 57.6
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 3.3e-89 332.8 356 57.6
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.3e-89 332.8 365 55.1
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 4.3e-89 332.4 380 53.4
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 5.6e-89 332.0 373 54.4
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.6e-88 330.5 332 60.5
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 4.8e-88 328.9 361 57.1
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 6.2e-88 328.6 359 54.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.1e-87 327.8 360 55.8
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.8e-87 327.0 365 54.5
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.4e-87 326.6 352 55.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.4e-87 326.6 352 55.1
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 2.4e-87 326.6 380 54.7
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-87 326.6 371 54.7
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.4e-87 326.6 384 52.1
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 3.1e-87 326.2 367 52.3
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 5.3e-87 325.5 376 53.2
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 6.9e-87 325.1 377 51.7
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.2e-86 324.3 356 54.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.2e-86 324.3 332 60.2
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.0e-86 323.6 361 56.8
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.6e-86 323.2 362 55.8
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 5.8e-86 322.0 360 53.1
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 7.6e-86 321.6 339 57.5
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.3e-85 320.9 332 58.4
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 8.4e-85 318.2 373 53.1
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.4e-85 318.2 379 54.9
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.1e-84 317.8 370 54.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 9.3e-84 314.7 375 51.7
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.9e-81 307.0 328 58.2
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.3e-81 305.8 326 57.7
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 6.9e-79 298.5 313 59.1
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 5.8e-78 295.4 367 51.0
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.8e-77 292.7 306 57.5
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 4.2e-76 289.3 359 50.7
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.7e-74 282.0 360 48.6
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.1e-73 281.2 363 50.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.2e-72 276.9 340 52.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 4.8e-72 275.8 370 49.2
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 5.3e-71 272.3 362 50.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.3e-69 267.7 397 45.3
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 4.8e-64 249.2 359 47.9
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-64 248.8 250 58.4
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 8.2e-64 248.4 272 55.1
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.5e-60 236.9 358 45.5
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.1e-59 233.8 254 56.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 4.7e-59 232.6 326 48.8
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.8e-58 228.4 223 61.9
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.5e-57 227.6 294 50.0
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.5e-54 216.5 337 46.0
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.5e-49 201.1 376 38.3
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.7e-48 197.6 271 50.6
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 5.3e-47 192.6 365 40.5
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 5.0e-45 186.0 192 55.7
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 2.5e-44 183.7 369 40.9
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-43 180.6 311 42.4
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 4.5e-38 162.9 189 52.4
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.0e-37 161.8 454 32.2
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.8e-37 159.8 149 61.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 5.0e-37 159.5 391 34.5
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.8e-34 151.0 172 52.9
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-32 144.4 192 48.4
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.6e-30 137.9 200 46.5
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.0e-29 135.2 169 50.3
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-28 131.0 149 55.0
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 3.0e-26 123.6 136 54.4
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 6.3e-24 115.9 172 48.8
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-22 111.3 167 44.9
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 4.6e-14 83.2 146 41.8
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.1e-11 74.3 113 46.0
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.6e-11 73.6 66 62.1
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 6.2e-11 72.8 67 58.2
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.1e-10 72.0 95 49.5
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.4e-07 60.8 189 33.9
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.2e-06 58.5 63 47.6
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 2.7e-06 57.4 68 54.4
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 3.5e-06 57.0 46 60.9
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 4.6e-06 56.6 185 29.7


User provided reference genes

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