Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 2.3e-133 478.8 224 100.0
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.0e-96 357.1 207 81.2
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.8e-93 346.3 207 78.3
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 6.8e-93 344.4 207 78.3
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 8.8e-93 344.0 207 78.3
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 2.6e-92 342.4 207 77.8
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 3.4e-92 342.0 189 83.1
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 3.4e-92 342.0 189 82.5
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 5.7e-92 341.3 209 76.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.7e-92 341.3 207 77.3
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 7.5e-92 340.9 208 76.4
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 7.5e-92 340.9 208 76.4
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 7.5e-92 340.9 223 72.6
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.3e-91 340.1 207 76.3
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.7e-91 339.7 192 81.2
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 2.2e-91 339.3 209 76.1
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 2.2e-91 339.3 207 77.3
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.8e-91 339.0 207 76.8
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 2.8e-91 339.0 208 77.9
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 3.7e-91 338.6 207 76.8
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 6.3e-91 337.8 208 77.4
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 8.3e-91 337.4 207 76.8
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.4e-90 336.7 202 78.2
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.4e-90 336.7 207 75.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.8e-90 336.3 189 83.1
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 2.4e-90 335.9 188 81.4
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.1e-90 335.5 211 75.8
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 3.1e-90 335.5 209 77.5
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 4.1e-90 335.1 207 75.8
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 5.4e-90 334.7 207 75.4
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 5.4e-90 334.7 207 75.4
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 5.4e-90 334.7 188 81.9
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 9.2e-90 334.0 208 75.5
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.2e-89 333.6 207 75.8
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.2e-89 333.6 207 77.8
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 1.2e-89 333.6 207 75.4
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.6e-89 333.2 207 75.4
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 1.6e-89 333.2 188 79.8
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 2.0e-89 332.8 188 81.4
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 2.7e-89 332.4 203 78.3
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.5e-89 332.0 192 81.2
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.5e-89 332.0 189 81.5
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 3.5e-89 332.0 202 76.7
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 5.9e-89 331.3 188 79.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.3e-88 330.1 190 82.1
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 1.3e-88 330.1 190 81.1
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.7e-88 329.7 207 73.4
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 2.3e-88 329.3 188 80.3
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 2.3e-88 329.3 204 76.0
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 3.8e-88 328.6 206 73.8
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 5.0e-88 328.2 210 74.8
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 8.6e-88 327.4 192 81.2
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.1e-87 327.0 188 79.3
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 1.5e-87 326.6 190 79.5
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.9e-87 326.2 203 76.8
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.9e-87 326.2 203 76.8
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 3.3e-87 325.5 230 68.3
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 3.3e-87 325.5 189 81.0
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 4.3e-87 325.1 190 79.5
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 7.3e-87 324.3 208 72.1
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 7.3e-87 324.3 208 73.1
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 2.1e-86 322.8 208 73.1
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 3.6e-86 322.0 208 72.6
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 4.7e-86 321.6 207 73.4
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 6.1e-86 321.2 204 72.5
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 6.1e-86 321.2 207 73.9
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 8.0e-86 320.9 190 78.4
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.0e-85 320.5 200 75.5
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.4e-85 320.1 208 71.6
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.4e-85 320.1 208 71.6
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.8e-85 319.7 208 71.2
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 3.0e-85 318.9 208 71.2
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 3.0e-85 318.9 208 71.2
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 3.0e-85 318.9 189 79.4
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 3.0e-85 318.9 207 72.9
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 5.2e-85 318.2 207 73.4
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 5.2e-85 318.2 202 74.8
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 5.2e-85 318.2 193 76.2
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 6.8e-85 317.8 203 72.4
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.2e-84 317.0 203 74.9
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.5e-84 316.6 208 70.7
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 7.5e-84 314.3 192 77.1
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 9.8e-84 313.9 213 69.5
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-83 313.5 189 78.3
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.7e-83 313.2 192 75.0
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.2e-83 312.8 208 70.7
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 3.7e-83 312.0 203 71.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 8.3e-83 310.8 208 69.7
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 8.3e-83 310.8 203 72.9
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.4e-82 309.3 203 72.4
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 4.1e-82 308.5 189 75.1
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 5.4e-82 308.1 177 78.0
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 5.4e-82 308.1 214 69.6
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 7.0e-82 307.8 192 73.4
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.2e-81 307.0 178 78.7
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.2e-81 307.0 182 75.8
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.0e-80 303.9 177 78.0
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.3e-80 303.5 177 78.5
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.7e-80 303.1 154 85.7
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 7.3e-79 297.7 178 75.8
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 4.0e-77 292.0 172 75.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.6e-76 289.3 182 71.4
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 5.8e-76 288.1 163 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.5e-71 273.5 162 75.3
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 9.2e-66 254.2 165 68.5
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-58 230.3 144 72.2
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-58 230.3 144 72.2
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.4e-58 230.3 118 85.6
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 7.8e-57 224.6 118 83.9
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 8.1e-54 214.5 159 65.4
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 8.1e-54 214.5 118 81.4
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 2.4e-53 213.0 125 76.8
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.9e-51 206.1 125 76.8
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 1.2e-49 200.7 125 72.0
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.9e-47 193.4 117 73.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 5.6e-47 191.8 138 63.8
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.7e-43 180.3 107 80.4
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 2.9e-35 152.9 89 78.7
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.2e-28 131.0 82 74.4
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.0e-28 130.2 86 72.1
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.0e-27 127.9 80 76.2
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 7.9e-25 118.2 196 34.7
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 3.8e-19 99.4 170 34.1
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 4.8e-14 82.4 41 90.2
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 8.2e-14 81.6 64 60.9
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-11 74.3 79 50.6
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.6e-09 67.4 42 69.0


User provided reference genes

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