Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2541.5 1265 100.0
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2326.2 1265 91.1
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2109.7 1271 82.9
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2109.7 1271 83.0
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2109.0 1270 82.0
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2107.4 1267 82.5
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2104.7 1267 82.3
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2097.8 1266 82.2
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2095.1 1266 82.2
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2094.7 1265 81.9
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2091.2 1267 81.9
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2090.5 1265 81.7
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2089.7 1268 82.3
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2089.3 1268 80.9
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2088.9 1267 81.8
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2087.8 1268 81.4
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2087.4 1267 82.4
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2086.6 1267 81.7
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2086.2 1268 81.6
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2085.8 1267 82.4
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2085.5 1268 81.6
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2084.7 1269 81.4
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2084.3 1269 81.4
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2082.4 1269 81.0
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2081.2 1265 81.4
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2081.2 1268 81.1
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2081.2 1264 81.9
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2080.8 1267 81.1
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2080.1 1267 81.1
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2077.4 1268 80.9
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2077.0 1267 80.2
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2076.6 1265 80.7
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2076.6 1267 80.3
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2076.2 1268 81.5
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2074.3 1265 80.3
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2074.3 1264 81.6
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2073.9 1265 80.3
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2073.5 1265 80.1
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2073.1 1267 80.5
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2071.2 1267 81.2
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2071.2 1265 80.1
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2070.0 1265 79.9
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2070.0 1264 81.5
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2068.9 1265 80.2
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2067.7 1264 81.2
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2067.7 1266 79.8
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2067.4 1265 80.1
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2065.8 1268 80.1
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2065.8 1267 80.0
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2065.4 1265 80.2
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2065.0 1267 80.3
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2064.7 1259 80.9
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2062.7 1268 80.6
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2062.0 1258 81.6
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2059.6 1266 80.9
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2058.9 1265 79.9
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2058.1 1265 79.9
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2057.7 1267 81.7
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2057.3 1270 79.8
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2056.2 1267 80.9
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2055.0 1267 80.2
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2053.5 1266 80.7
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2053.5 1265 80.8
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2052.7 1266 80.8
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2049.2 1271 79.7
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2046.9 1265 79.4
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2046.2 1267 80.5
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2045.8 1265 80.1
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2045.4 1267 80.2
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2045.0 1271 79.3
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2044.6 1266 79.8
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2042.3 1263 80.0
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2041.9 1268 79.9
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2040.0 1270 79.2
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2036.5 1264 80.5
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2035.8 1274 79.7
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2035.0 1267 79.3
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2033.5 1271 79.2
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2033.1 1267 79.2
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2030.0 1265 80.1
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2027.7 1270 79.0
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2019.2 1250 80.3
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2018.8 1269 78.8
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2016.9 1267 78.5
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 2015.4 1262 78.4
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2015.4 1270 78.5
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2011.1 1261 79.4
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2010.7 1239 80.2
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2002.3 1207 82.9
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 1987.6 1266 77.5
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 1981.1 1270 77.9
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1971.1 1270 76.8
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 1963.7 1274 75.7
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1930.2 1159 82.9
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 1923.7 1267 75.8
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1914.4 1276 73.9
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1882.5 1272 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1852.0 1241 74.1
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1846.2 1272 72.7
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1842.0 1264 72.5
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1782.3 1192 75.1
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1773.4 1069 81.0
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1721.8 1132 76.8
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1713.0 1090 78.4
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1674.4 1268 68.1
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1668.7 1266 67.7
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1555.4 1317 61.8
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1553.9 962 78.9
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1553.9 1047 73.4
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1311.2 1393 52.1
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1309.7 812 79.4
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1308.9 1328 53.0
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1279.6 1265 57.5
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1176.0 726 81.5
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1096.6 1021 59.2
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1078.2 807 69.1
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 5.1e-262 908.7 1236 41.7
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 1.3e-252 877.5 568 77.5
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.3e-246 856.7 503 84.3
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 8.2e-220 768.5 657 60.7
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 2.0e-210 737.3 527 71.3
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.2e-186 658.3 447 76.1
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 8.9e-174 615.5 390 80.5
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 1.1e-131 475.7 359 68.8
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 3.0e-113 414.5 311 69.1
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 3.2e-99 367.9 266 71.1
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 1.9e-75 288.9 479 40.7
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 2.8e-66 258.5 169 74.0
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 5.2e-65 254.2 169 73.4
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 7.5e-64 250.4 169 72.2
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.1e-62 246.5 139 90.6
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 1.2e-58 233.0 235 56.6
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 4.1e-46 191.4 117 76.9
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 4.3e-43 181.4 152 67.8
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.2e-39 169.1 91 85.7
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 3.2e-38 165.2 183 55.2
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 5.8e-32 144.4 100 65.0
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 2.8e-26 125.6 104 63.5


User provided reference genes

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